Literature DB >> 16511056

Crystallization and preliminary X-ray crystallographic analysis of a conserved domain in plants and prokaryotes from Pyrococcus horikoshii OT3.

Linyen Lin1, Hiroaki Nakano, Susumu Uchiyama, Satoru Fujimoto, Sachihiro Matsunaga, Shota Nakamura, Yuji Kobayashi, Tadayasu Ohkubo, Kiichi Fukui.   

Abstract

A plant- and prokaryote-conserved domain (PPC) has previously been found in AT-hook motif nuclear localized protein 1 (AHL1) localized in the nuclear matrix of Arabidopsis thaliana (AtAHL1). AtAHL1 has a DNA-binding function. Mutation analyses of AtAHL1 has previously revealed that the hydrophobic region of the PPC domain is essential for its nuclear localization. In this study, the PPC of the hyperthermophilic archaebacterium Pyrococcus horikoshii (PhPPC) was crystallized using the hanging-drop vapour-diffusion method. The crystals belonged to the hexagonal space group P6(3)22, with unit-cell parameters a = b = 53.69, c = 159.2 A. Data were obtained at 100 K, with diffraction being observed to a resolution of 1.7 A. A complete data set from crystals of the SeMet-substituted protein was also obtained.

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Year:  2005        PMID: 16511056      PMCID: PMC1952417          DOI: 10.1107/S1744309105007815

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  5 in total

1.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

2.  Identification of a novel plant MAR DNA binding protein localized on chromosomal surfaces.

Authors:  Satoru Fujimoto; Sachihiro Matsunaga; Masataka Yonemura; Susumu Uchiyama; Takachika Azuma; Kiichi Fukui
Journal:  Plant Mol Biol       Date:  2004-09       Impact factor: 4.076

3.  Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3.

Authors:  Y Kawarabayasi; M Sawada; H Horikawa; Y Haikawa; Y Hino; S Yamamoto; M Sekine; S Baba; H Kosugi; A Hosoyama; Y Nagai; M Sakai; K Ogura; R Otsuka; H Nakazawa; M Takamiya; Y Ohfuku; T Funahashi; T Tanaka; Y Kudoh; J Yamazaki; N Kushida; A Oguchi; K Aoki; H Kikuchi
Journal:  DNA Res       Date:  1998-04-30       Impact factor: 4.458

4.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

5.  Cloning, purification, crystallization and preliminary crystallographic analysis of acylphosphatase from Pyrococcus horikoshii OT3.

Authors:  Ken Ichi Miyazono; Norio Kudo; Masaru Tanokura
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-05-21
  5 in total
  3 in total

1.  Shedding light on the role of AT-hook/PPC domain protein in Arabidopsis thaliana.

Authors:  Kian-Hong Ng; Toshiro Ito
Journal:  Plant Signal Behav       Date:  2010-02-04

2.  Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain.

Authors:  Jianfei Zhao; David S Favero; Hao Peng; Michael M Neff
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-11       Impact factor: 11.205

3.  Insights into the evolution and diversification of the AT-hook Motif Nuclear Localized gene family in land plants.

Authors:  Jianfei Zhao; David S Favero; Jiwen Qiu; Eric H Roalson; Michael M Neff
Journal:  BMC Plant Biol       Date:  2014-10-14       Impact factor: 4.215

  3 in total

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