Literature DB >> 16510970

Evaluation of crystalline objects in crystallizing protein droplets based on line-segment information in greyscale images.

Kuniaki Kawabata1, Mutsunori Takahashi, Kanako Saitoh, Hajime Asama, Taketoshi Mishima, Mitsuaki Sugahara, Masashi Miyano.   

Abstract

Several automated crystallization systems have recently been developed for high-throughput X-ray structure analysis. However, the evaluation process for the growth state of crystallizing protein droplets has not yet been completely automated. This paper proposes a new evaluation method for crystalline objects in automated crystallization experiments. The main objective is to determine whether a droplet contains crystals suitable for diffraction experiments and analysis. The evaluation method developed here involves extracting line-segment features from an image of the droplet and discriminating the state of crystallization using classifiers based on line features. In order to verify the efficacy of the proposed method, it was used to classify images obtained by an automated crystallization system.

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Year:  2006        PMID: 16510970     DOI: 10.1107/S0907444905041077

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  4 in total

1.  High-throughput crystallization-to-structure pipeline at RIKEN SPring-8 Center.

Authors:  Michihiro Sugahara; Yukuhiko Asada; Katsumi Shimizu; Hitoshi Yamamoto; Neratur K Lokanath; Hisashi Mizutani; Bagautdin Bagautdinov; Yoshinori Matsuura; Midori Taketa; Yuichi Kageyama; Naoko Ono; Yuko Morikawa; Yukiko Tanaka; Hiroki Shimada; Takanobu Nakamoto; Mitsuaki Sugahara; Masaki Yamamoto; Naoki Kunishima
Journal:  J Struct Funct Genomics       Date:  2008-08-02

2.  Protein crystallization analysis on the World Community Grid.

Authors:  Christian A Cumbaa; Igor Jurisica
Journal:  J Struct Funct Genomics       Date:  2010-01-14

3.  Image-based crystal detection: a machine-learning approach.

Authors:  Roy Liu; Yoav Freund; Glen Spraggon
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-11-18

4.  Using textons to rank crystallization droplets by the likely presence of crystals.

Authors:  Jia Tsing Ng; Carien Dekker; Markus Kroemer; Michael Osborne; Frank von Delft
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-09-27
  4 in total

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