Literature DB >> 16510783

Synthetic gene recruitment reveals adaptive reprogramming of gene regulation in yeast.

Elad Stolovicki1, Tali Dror, Naama Brenner, Erez Braun.   

Abstract

The recruitment of a gene to a foreign regulatory system is a major evolutionary event that can lead to novel phenotypes. However, the evolvability potential of cells depends on their ability to cope with challenges presented by gene recruitment. To study this ability, we combined synthetic gene recruitment with continuous culture and online measurements of the metabolic and regulatory dynamics over long timescales. The gene HIS3 from the histidine synthesis pathway was recruited to the GAL system, responsible for galactose utilization in the yeast S. cerevisiae. Following a switch from galactose to glucose--from induced to repressed conditions of the GAL system--in histidine-lacking chemostats (where the recruited HIS3 is essential), the regulatory system reprogrammed to adaptively tune HIS3 expression, allowing the cells to grow competitively in pure glucose. The adapted state was maintained for hundreds of generations in various environments. The timescales involved and the reproducibility of separate experiments render spontaneous mutations an unlikely underlying mechanism. Essentially all cells could adapt, excluding selection over a genetically variable population. The results reveal heritable adaptation induced by the exposure to glucose. They demonstrate that genetic regulatory networks have the potential to support highly demanding events of gene recruitment.

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Year:  2006        PMID: 16510783      PMCID: PMC1461455          DOI: 10.1534/genetics.106.055442

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  29 in total

1.  Use of imidazoleglycerolphosphate dehydratase (His3) as a biological reporter in yeast.

Authors:  J Horecka; G F Sprague
Journal:  Methods Enzymol       Date:  2000       Impact factor: 1.600

2.  Transcription control reprogramming in genetic backup circuits.

Authors:  Ran Kafri; Arren Bar-Even; Yitzhak Pilpel
Journal:  Nat Genet       Date:  2005-02-20       Impact factor: 38.330

3.  Experiments with the Chemostat on spontaneous mutations of bacteria.

Authors:  A NOVICK; L SZILARD
Journal:  Proc Natl Acad Sci U S A       Date:  1950-12       Impact factor: 11.205

4.  Dissecting the architecture of a quantitative trait locus in yeast.

Authors:  Lars M Steinmetz; Himanshu Sinha; Dan R Richards; Jamie I Spiegelman; Peter J Oefner; John H McCusker; Ronald W Davis
Journal:  Nature       Date:  2002-03-21       Impact factor: 49.962

5.  Genomic expression programs in the response of yeast cells to environmental changes.

Authors:  A P Gasch; P T Spellman; C M Kao; O Carmel-Harel; M B Eisen; G Storz; D Botstein; P O Brown
Journal:  Mol Biol Cell       Date:  2000-12       Impact factor: 4.138

6.  Cell signaling can direct either binary or graded transcriptional responses.

Authors:  S R Biggar; G R Crabtree
Journal:  EMBO J       Date:  2001-06-15       Impact factor: 11.598

Review 7.  Transcriptional control of the GAL/MEL regulon of yeast Saccharomyces cerevisiae: mechanism of galactose-mediated signal transduction.

Authors:  P J Bhat; T V Murthy
Journal:  Mol Microbiol       Date:  2001-06       Impact factor: 3.501

8.  Green fluorescent protein in Saccharomyces cerevisiae: real-time studies of the GAL1 promoter.

Authors:  J Li; S Wang; W J VanDusen; L D Schultz; H A George; W K Herber; H J Chae; W E Bentley; G Rao
Journal:  Biotechnol Bioeng       Date:  2000-10-20       Impact factor: 4.530

9.  Remodeling of yeast genome expression in response to environmental changes.

Authors:  H C Causton; B Ren; S S Koh; C T Harbison; E Kanin; E G Jennings; T I Lee; H L True; E S Lander; R A Young
Journal:  Mol Biol Cell       Date:  2001-02       Impact factor: 4.138

Review 10.  Evolution at two levels: on genes and form.

Authors:  Sean B Carroll
Journal:  PLoS Biol       Date:  2005-07-12       Impact factor: 8.029

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  22 in total

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Authors:  Chen-Hsiang Yeang
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2.  Stochastic tuning of gene expression enables cellular adaptation in the absence of pre-existing regulatory circuitry.

Authors:  Peter L Freddolino; Jamie Yang; Amir Momen-Roknabadi; Saeed Tavazoie
Journal:  Elife       Date:  2018-04-05       Impact factor: 8.140

Review 3.  Cell signaling as a cognitive process.

Authors:  Aneta Koseska; Philippe Ih Bastiaens
Journal:  EMBO J       Date:  2017-01-30       Impact factor: 11.598

4.  Robustness of a rhythmic circuit to short- and long-term temperature changes.

Authors:  Lamont S Tang; Adam L Taylor; Anatoly Rinberg; Eve Marder
Journal:  J Neurosci       Date:  2012-07-18       Impact factor: 6.167

Review 5.  The genome as a developmental organ.

Authors:  Ehud Lamm
Journal:  J Physiol       Date:  2014-06-01       Impact factor: 5.182

6.  Inherited adaptation of genome-rewired cells in response to a challenging environment.

Authors:  Lior David; Elad Stolovicki; Efrat Haziz; Erez Braun
Journal:  HFSP J       Date:  2010-04-02

7.  Metabolic cost of rapid adaptation of single yeast cells.

Authors:  Gabrielle Woronoff; Philippe Nghe; Jean Baudry; Laurent Boitard; Erez Braun; Andrew D Griffiths; Jérôme Bibette
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-05       Impact factor: 11.205

8.  Cellular plasticity enables adaptation to unforeseen cell-cycle rewiring challenges.

Authors:  Yair Katzir; Elad Stolovicki; Shay Stern; Erez Braun
Journal:  PLoS One       Date:  2012-09-18       Impact factor: 3.240

9.  Adaptation by stochastic switching of a monostable genetic circuit in Escherichia coli.

Authors:  Saburo Tsuru; Nao Yasuda; Yoshie Murakami; Junya Ushioda; Akiko Kashiwagi; Shingo Suzuki; Kotaro Mori; Bei-Wen Ying; Tetsuya Yomo
Journal:  Mol Syst Biol       Date:  2011-05-24       Impact factor: 11.429

10.  Epigenetic feedback regulation accelerates adaptation and evolution.

Authors:  Chikara Furusawa; Kunihiko Kaneko
Journal:  PLoS One       Date:  2013-05-08       Impact factor: 3.240

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