Literature DB >> 16510497

Family specific rates of protein evolution.

Hannes Luz1, Martin Vingron.   

Abstract

MOTIVATION: Amino acid changing mutations in proteins are contstrained by purifying selection and accumulate at different rates. We estimate evolutionary rates on multiple alignments of eukaryotic protein families in a maximum likelihood framework and spot sets of slow and fast evolving proteins.
RESULTS: We find that the evolution of indispensable proteins is constrained by selection and that protein secretion is coupled to an increased evolutionary rate.

Mesh:

Substances:

Year:  2006        PMID: 16510497     DOI: 10.1093/bioinformatics/btl073

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  10 in total

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Journal:  J Biol Chem       Date:  2009-01-05       Impact factor: 5.157

2.  Networks of bZIP protein-protein interactions diversified over a billion years of evolution.

Authors:  Aaron W Reinke; Jiyeon Baek; Orr Ashenberg; Amy E Keating
Journal:  Science       Date:  2013-05-10       Impact factor: 47.728

3.  Correlating traits of gene retention, sequence divergence, duplicability and essentiality in vertebrates, arthropods, and fungi.

Authors:  Robert M Waterhouse; Evgeny M Zdobnov; Evgenia V Kriventseva
Journal:  Genome Biol Evol       Date:  2010-12-09       Impact factor: 3.416

Review 4.  Homology-independent metrics for comparative genomics.

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5.  Snake venoms are integrated systems, but abundant venom proteins evolve more rapidly.

Authors:  Steven D Aird; Shikha Aggarwal; Alejandro Villar-Briones; Mandy Man-Ying Tin; Kouki Terada; Alexander S Mikheyev
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6.  ITEP: an integrated toolkit for exploration of microbial pan-genomes.

Authors:  Matthew N Benedict; James R Henriksen; William W Metcalf; Rachel J Whitaker; Nathan D Price
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7.  Multilevel comparative bioinformatics to investigate evolutionary relationships and specificities in gene annotations: an example for tomato and grapevine.

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Journal:  BMC Bioinformatics       Date:  2018-11-30       Impact factor: 3.169

8.  Functional protein divergence in the evolution of Homo sapiens.

Authors:  Nuria Lopez-Bigas; Subhajyoti De; Sarah A Teichmann
Journal:  Genome Biol       Date:  2008-02-15       Impact factor: 13.583

9.  Hierarchical partitioning of metazoan protein conservation profiles provides new functional insights.

Authors:  Jonathan Witztum; Erez Persi; David Horn; Metsada Pasmanik-Chor; Benny Chor
Journal:  PLoS One       Date:  2014-03-04       Impact factor: 3.240

10.  Essentiality Is a Strong Determinant of Protein Rates of Evolution during Mutation Accumulation Experiments in Escherichia coli.

Authors:  David Alvarez-Ponce; Beatriz Sabater-Muñoz; Christina Toft; Mario X Ruiz-González; Mario A Fares
Journal:  Genome Biol Evol       Date:  2016-09-26       Impact factor: 3.416

  10 in total

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