Literature DB >> 16510496

GALGO: an R package for multivariate variable selection using genetic algorithms.

Victor Trevino1, Francesco Falciani.   

Abstract

SUMMARY: The development of statistical models linking the molecular state of a cell to its physiology is one of the most important tasks in the analysis of Functional Genomics data. Because of the large number of variables measured a comprehensive evaluation of variable subsets cannot be performed with available computational resources. It follows that an efficient variable selection strategy is required. However, although software packages for performing univariate variable selection are available, a comprehensive software environment to develop and evaluate multivariate statistical models using a multivariate variable selection strategy is still needed. In order to address this issue, we developed GALGO, an R package based on a genetic algorithm variable selection strategy, primarily designed to develop statistical models from large-scale datasets.

Mesh:

Year:  2006        PMID: 16510496     DOI: 10.1093/bioinformatics/btl074

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  38 in total

Review 1.  DNA microarrays: a powerful genomic tool for biomedical and clinical research.

Authors:  Victor Trevino; Francesco Falciani; Hugo A Barrera-Saldaña
Journal:  Mol Med       Date:  2007 Sep-Oct       Impact factor: 6.354

2.  Magnetization-prepared rapid acquisition with gradient echo magnetic resonance imaging signal and texture features for the prediction of mild cognitive impairment to Alzheimer's disease progression.

Authors:  Antonio Martinez-Torteya; Juan Rodriguez-Rojas; José M Celaya-Padilla; Jorge I Galván-Tejada; Victor Treviño; Jose Tamez-Peña
Journal:  J Med Imaging (Bellingham)       Date:  2014-09-15

3.  Serum antiglycan antibody detection of nonmucinous ovarian cancers by using a printed glycan array.

Authors:  Francis Jacob; Darlene R Goldstein; Nicolai V Bovin; Tatiana Pochechueva; Marianne Spengler; Rosemarie Caduff; Daniel Fink; Marko I Vuskovic; Margaret E Huflejt; Viola Heinzelmann-Schwarz
Journal:  Int J Cancer       Date:  2011-04-25       Impact factor: 7.396

Review 4.  Multi-Sensor Fusion for Activity Recognition-A Survey.

Authors:  Antonio A Aguileta; Ramon F Brena; Oscar Mayora; Erik Molino-Minero-Re; Luis A Trejo
Journal:  Sensors (Basel)       Date:  2019-09-03       Impact factor: 3.576

5.  Variable selection in Logistic regression model with genetic algorithm.

Authors:  Zhongheng Zhang; Victor Trevino; Sayed Shahabuddin Hoseini; Smaranda Belciug; Arumugam Manivanna Boopathi; Ping Zhang; Florin Gorunescu; Velappan Subha; Songshi Dai
Journal:  Ann Transl Med       Date:  2018-02

6.  Mapping drug physico-chemical features to pathway activity reveals molecular networks linked to toxicity outcome.

Authors:  Philipp Antczak; Fernando Ortega; J Kevin Chipman; Francesco Falciani
Journal:  PLoS One       Date:  2010-08-27       Impact factor: 3.240

7.  Identification and optimization of classifier genes from multi-class earthworm microarray dataset.

Authors:  Ying Li; Nan Wang; Edward J Perkins; Chaoyang Zhang; Ping Gong
Journal:  PLoS One       Date:  2010-10-28       Impact factor: 3.240

8.  Property differences among the four major Candida albicans strain clades.

Authors:  Donna M MacCallum; Luis Castillo; Kerstin Nather; Carol A Munro; Alistair J P Brown; Neil A R Gow; Frank C Odds
Journal:  Eukaryot Cell       Date:  2009-01-16

9.  Evaluating microarray-based classifiers: an overview.

Authors:  A-L Boulesteix; C Strobl; T Augustin; M Daumer
Journal:  Cancer Inform       Date:  2008-02-29

10.  BioSunMS: a plug-in-based software for the management of patients information and the analysis of peptide profiles from mass spectrometry.

Authors:  Yuan Cao; Na Wang; Xiaomin Ying; Ailing Li; Hengsha Wang; Xuemin Zhang; Wuju Li
Journal:  BMC Med Inform Decis Mak       Date:  2009-02-17       Impact factor: 2.796

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