Literature DB >> 16509746

Deactivation mechanism of the green fluorescent chromophore.

Rinat Gepshtein1, Dan Huppert, Noam Agmon.   

Abstract

We report time-resolved fluorescence data for the anion of p-hydroxybenzylidene dimethylimidazolinone (p-HBDI), a model chromophore of the green fluorescence protein, in viscous glycerol-water mixtures over a range of temperatures, T. The markedly nonexponential decay of the excited electronic state is interpreted with the aid of an inhomogeneous model possessing a Gaussian coordinate-dependent sink term. A nonlinear least-squares fitting routine enables us to achieve quantitative fits by adjusting a single activation parameter, which is found to depend linearly on 1/T. We derive an analytic expression for the absolute quantum yield, which is compared with the integrated steady-state fluorescence spectra. The microscopic origins of the model are discussed in terms of two-dimensional dynamics, coupling the phenyl-ring rotation to a swinging mode that brings this flexible molecule to the proximity of a conical intersection on its multidimensional potential energy surface.

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Year:  2006        PMID: 16509746     DOI: 10.1021/jp0540095

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  8 in total

1.  Ultrafast Electronic and Vibrational Dynamics of Stabilized A State Mutants of the Green Fluorescent Protein (GFP): Snipping the Proton Wire.

Authors:  Deborah Stoner-Ma; Andrew A Jaye; Kate L Ronayne; Jerome Nappa; Peter J Tonge; Stephen R Meech
Journal:  Chem Phys       Date:  2008-06-23       Impact factor: 2.348

Review 2.  Green fluorescent protein: a perspective.

Authors:  S James Remington
Journal:  Protein Sci       Date:  2011-07-19       Impact factor: 6.725

3.  Stabilization of anionic and neutral forms of a fluorophoric ligand at the active site of human carbonic anhydrase I.

Authors:  Sumathra Manokaran; Jayati Banerjee; Sanku Mallik; D K Srivastava
Journal:  Biochim Biophys Acta       Date:  2010-07-08

4.  Mechanically switching single-molecule fluorescence of GFP by unfolding and refolding.

Authors:  Ziad Ganim; Matthias Rief
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-03       Impact factor: 11.205

5.  General Approach to Coupled Reactive Smoluchowski Equations: Integration and Application of Discrete Variable Representation and Generalized Coordinate Methods to Diffusive Problems.

Authors:  Andrea Piserchia; Shiladitya Banerjee; Vincenzo Barone
Journal:  J Chem Theory Comput       Date:  2017-11-13       Impact factor: 6.006

6.  Toward a General Yet Effective Computational Approach for Diffusive Problems: Variable Diffusion Tensor and DVR Solution of the Smoluchowski Equation along a General One-Dimensional Coordinate.

Authors:  Andrea Piserchia; Vincenzo Barone
Journal:  J Chem Theory Comput       Date:  2016-07-25       Impact factor: 6.006

7.  An Engineered Biliverdin-Compatible Cyanobacteriochrome Enables a Unique Ultrafast Reversible Photoswitching Pathway.

Authors:  Sean R Tachibana; Longteng Tang; Liangdong Zhu; Yuka Takeda; Keiji Fushimi; Yoshibumi Ueda; Takahiro Nakajima; Yuto Kuwasaki; Moritoshi Sato; Rei Narikawa; Chong Fang
Journal:  Int J Mol Sci       Date:  2021-05-16       Impact factor: 5.923

8.  Structure-fluorescence activation relationships of a large Stokes shift fluorogenic RNA aptamer.

Authors:  Christian Steinmetzger; Irene Bessi; Ann-Kathrin Lenz; Claudia Höbartner
Journal:  Nucleic Acids Res       Date:  2019-12-16       Impact factor: 16.971

  8 in total

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