Literature DB >> 16507357

Biomedical language processing: what's beyond PubMed?

Lawrence Hunter1, K Bretonnel Cohen.   

Abstract

Mesh：

Year:  2006        PMID： 16507357      PMCID： PMC1702322          DOI： 10.1016/j.molcel.2006.02.012

Source DB:  PubMed          Journal:  Mol Cell        ISSN： 1097-2765            Impact factor:   17.970


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  21 in total

1.  MedMiner: an Internet text-mining tool for biomedical information, with application to gene expression profiling.

Authors:  L Tanabe; U Scherf; L H Smith; J K Lee; L Hunter; J N Weinstein
Journal:  Biotechniques       Date:  1999-12       Impact factor: 1.993

2.  Evaluation of text data mining for database curation: lessons learned from the KDD Challenge Cup.

Authors:  Alexander S Yeh; Lynette Hirschman; Alexander A Morgan
Journal:  Bioinformatics       Date:  2003       Impact factor: 6.937

3.  Automated extraction of mutation data from the literature: application of MuteXt to G protein-coupled receptors and nuclear hormone receptors.

Authors:  Florence Horn; Anthony L Lau; Fred E Cohen
Journal:  Bioinformatics       Date:  2004-01-22       Impact factor: 6.937

Review 4.  Text mining and ontologies in biomedicine: making sense of raw text.

Authors:  Irena Spasic; Sophia Ananiadou; John McNaught; Anand Kumar
Journal:  Brief Bioinform       Date:  2005-09       Impact factor: 11.622

Review 5.  A survey of current work in biomedical text mining.

Authors:  Aaron M Cohen; William R Hersh
Journal:  Brief Bioinform       Date:  2005-03       Impact factor: 11.622

6.  PreBIND and Textomy--mining the biomedical literature for protein-protein interactions using a support vector machine.

Authors:  Ian Donaldson; Joel Martin; Berry de Bruijn; Cheryl Wolting; Vicki Lay; Brigitte Tuekam; Shudong Zhang; Berivan Baskin; Gary D Bader; Katerina Michalickova; Tony Pawson; Christopher W V Hogue
Journal:  BMC Bioinformatics       Date:  2003-03-27       Impact factor: 3.169

7.  Textpresso: an ontology-based information retrieval and extraction system for biological literature.

Authors:  Hans-Michael Müller; Eimear E Kenny; Paul W Sternberg
Journal:  PLoS Biol       Date:  2004-09-21       Impact factor: 8.029

8.  Overview of BioCreAtIvE task 1B: normalized gene lists.

Authors:  Lynette Hirschman; Marc Colosimo; Alexander Morgan; Alexander Yeh
Journal:  BMC Bioinformatics       Date:  2005-05-24       Impact factor: 3.169

9.  Overview of BioCreAtIvE: critical assessment of information extraction for biology.

Authors:  Lynette Hirschman; Alexander Yeh; Christian Blaschke; Alfonso Valencia
Journal:  BMC Bioinformatics       Date:  2005-05-24       Impact factor: 3.169

10.  Extraction of transcript diversity from scientific literature.

Authors:  Parantu K Shah; Lars J Jensen; Stéphanie Boué; Peer Bork
Journal:  PLoS Comput Biol       Date:  2005-06-24       Impact factor: 4.475
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  74 in total

1.  SEACOIN--an investigative tool for biomedical informatics researchers.

Authors:  Eva K Lee; Hee-Rin Lee; Alexander Quarshie
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

Review 2.  Frontiers of biomedical text mining: current progress.

Authors:  Pierre Zweigenbaum; Dina Demner-Fushman; Hong Yu; Kevin B Cohen
Journal:  Brief Bioinform       Date:  2007-10-30       Impact factor: 11.622

3.  Extraction of protein interaction data: a comparative analysis of methods in use.

Authors:  Hena Jose; Thangavel Vadivukarasi; Jyothi Devakumar
Journal:  EURASIP J Bioinform Syst Biol       Date:  2007

4.  Intrinsic evaluation of text mining tools may not predict performance on realistic tasks.

Authors:  J Gregory Caporaso; Nita Deshpande; J Lynn Fink; Philip E Bourne; K Bretonnel Cohen; Lawrence Hunter
Journal:  Pac Symp Biocomput       Date:  2008

5.  Collaborative text-annotation resource for disease-centered relation extraction from biomedical text.

Authors:  C Cano; T Monaghan; A Blanco; D P Wall; L Peshkin
Journal:  J Biomed Inform       Date:  2009-02-14       Impact factor: 6.317

6.  Document classification for mining host pathogen protein-protein interactions.

Authors:  Lanlan Yin; Guixian Xu; Manabu Torii; Zhendong Niu; Jose M Maisog; Cathy Wu; Zhangzhi Hu; Hongfang Liu
Journal:  Artif Intell Med       Date:  2010-05-15       Impact factor: 5.326

Review 7.  Recent progress in automatically extracting information from the pharmacogenomic literature.

Authors:  Yael Garten; Adrien Coulet; Russ B Altman
Journal:  Pharmacogenomics       Date:  2010-10       Impact factor: 2.533

8.  Improving the prediction of pharmacogenes using text-derived drug-gene relationships.

Authors:  Yael Garten; Nicholas P Tatonetti; Russ B Altman
Journal:  Pac Symp Biocomput       Date:  2010

9.  Arrowsmith two-node search interface: a tutorial on finding meaningful links between two disparate sets of articles in MEDLINE.

Authors:  Neil R Smalheiser; Vetle I Torvik; Wei Zhou
Journal:  Comput Methods Programs Biomed       Date:  2009-01-30       Impact factor: 5.428

10.  Biomedical discovery acceleration, with applications to craniofacial development.

Authors:  Sonia M Leach; Hannah Tipney; Weiguo Feng; William A Baumgartner; Priyanka Kasliwal; Ronald P Schuyler; Trevor Williams; Richard A Spritz; Lawrence Hunter
Journal:  PLoS Comput Biol       Date:  2009-03-27       Impact factor: 4.475
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