Literature DB >> 16503645

The conserved active-site loop residues of ferrochelatase induce porphyrin conformational changes necessary for catalysis.

Zhen Shi1, Ricardo Franco, Raid Haddad, John A Shelnutt, Gloria C Ferreira.   

Abstract

Binding of porphyrin to murine ferrochelatase, the terminal enzyme of the heme biosynthetic pathway, is investigated by employing a set of variants harboring mutations in a putative porphyrin-binding loop. Using resonance Raman (RR) spectroscopy, the structural properties of the ferrochelatase-bound porphyrins are examined, especially with respect to the porphyrin deformation occurring in the environment of the active site. This deformation is thought to be a key step in the enzymatic insertion of ferrous iron into the porphyrin ring to make heme. Our previous RR spectroscopic studies of binding of porphyrin to murine ferrochelatase led us to propose that the wild-type enzyme induces porphyrin distortion even in the absence of the metal ion substrate. Here, we broaden this view by presenting evidence that the degree of a specific nonplanar porphyrin deformation contributes to the catalytic efficiency of ferrochelatase and its variants. The results also suggest that the conserved Trp256 (murine ferrochelatase numbering) is partially responsible for the observed porphyrin deformation. Binding of porphyrin to the ferrochelatase variants causes a decrease in the intensity of RR out-of-plane vibrational mode gamma(15), a saddling-like mode that is strong in the wild-type enzyme. In particular, the variant with a catalytic efficiency 1 order of magnitude lower than that of the wild-type enzyme is estimated to produce less than 30% of the wild-type saddling deformation. These results suggest that specific conserved loop residues (especially Trp256) are directly involved in the saddling of the porphyrin substrate.

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Year:  2006        PMID: 16503645     DOI: 10.1021/bi051907i

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  11 in total

1.  Modulation of inhibition of ferrochelatase by N-methylprotoporphyrin.

Authors:  Zhen Shi; Gloria C Ferreira
Journal:  Biochem J       Date:  2006-10-01       Impact factor: 3.857

2.  Nickel(II) chelatase variants directly evolved from murine ferrochelatase: porphyrin distortion and kinetic mechanism.

Authors:  Neil R McIntyre; Ricardo Franco; John A Shelnutt; Gloria C Ferreira
Journal:  Biochemistry       Date:  2011-02-10       Impact factor: 3.162

3.  FERROCHELATASE: THE CONVERGENCE OF THE PORPHYRIN BIOSYNTHESIS AND IRON TRANSPORT PATHWAYS.

Authors:  Gregory A Hunter; Salam Al-Karadaghi; Gloria C Ferreira
Journal:  J Porphyr Phthalocyanines       Date:  2011       Impact factor: 1.811

4.  Substrate interactions with human ferrochelatase.

Authors:  Amy Medlock; Larkin Swartz; Tamara A Dailey; Harry A Dailey; William N Lanzilotta
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-29       Impact factor: 11.205

5.  Resonance Raman Spectroscopic Examination of Ferrochelatase-induced Porphyrin Distortion.

Authors:  Ricardo Franco; Salam Al-Karadaghi; Gloria C Ferreira
Journal:  J Porphyr Phthalocyanines       Date:  2011-05       Impact factor: 1.811

6.  Porphyrin binding and distortion and substrate specificity in the ferrochelatase reaction: the role of active site residues.

Authors:  Tobias Karlberg; Mattias D Hansson; Raymond K Yengo; Renzo Johansson; Hege O Thorvaldsen; Gloria C Ferreira; Mats Hansson; Salam Al-Karadaghi
Journal:  J Mol Biol       Date:  2008-03-28       Impact factor: 5.469

7.  Direct measurement of metal ion chelation in the active site of human ferrochelatase.

Authors:  M Hoggins; H A Dailey; C N Hunter; J D Reid
Journal:  Biochemistry       Date:  2007-06-13       Impact factor: 3.162

8.  Ferrochelatase π-helix: Implications from examining the role of the conserved π-helix glutamates in porphyrin metalation and product release.

Authors:  Mallory E Gillam; Gregory A Hunter; Gloria C Ferreira
Journal:  Arch Biochem Biophys       Date:  2018-02-23       Impact factor: 4.013

Review 9.  Molecular Engineering of Free-Base Porphyrins as Ligands-The N-H⋅⋅⋅X Binding Motif in Tetrapyrroles.

Authors:  Marc Kielmann; Mathias O Senge
Journal:  Angew Chem Int Ed Engl       Date:  2018-11-05       Impact factor: 15.336

10.  Soft chromophore featured liquid porphyrins and their utilization toward liquid electret applications.

Authors:  Avijit Ghosh; Manabu Yoshida; Kouji Suemori; Hiroaki Isago; Nagao Kobayashi; Yasuhisa Mizutani; Yuki Kurashige; Izuru Kawamura; Masami Nirei; Osamu Yamamuro; Tomohisa Takaya; Koichi Iwata; Akinori Saeki; Kazuhiko Nagura; Shinsuke Ishihara; Takashi Nakanishi
Journal:  Nat Commun       Date:  2019-09-30       Impact factor: 14.919

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