Literature DB >> 16500145

A novel method based on ligase detection reaction for low abundant YIDD mutants detection in hepatitis B virus.

Zhenxian Xiao1, Junxua Xiao, Yuexing Jiang, Shiyang Zhang, Minghui Yu, Jianlong Zhao, Dongzhi Wei, Huimin Cao.   

Abstract

A novel method based on ligase detection reaction (LDR) coupled with polymerase chain reaction (PCR) was used in this study to detect low abundant YIDD mutants in hepatitis B virus (HBV), which was able to detect 10(2) mutants from 10(8) wild type copies in plasmids and 10(3) from 10(7) in clinical serum samples. Direct sequencing and microarray hybridization were selected for sensitivity comparison together with this assay. By direct sequencing, 6 of 50 clinical specimens infected with HBV were found to be YIDD and the others to be YMDD, while by microarray hybridization, 28 specimens were detected to contain both YMDD and YIDD, and the others contained YMDD only, and with this assay, 31 specimens containing both YMDD and YIDD were detected with the others containing YMDD only, which indicated that the assay was relatively more sensitive.

Entities:  

Year:  2006        PMID: 16500145     DOI: 10.1016/j.hepres.2005.12.007

Source DB:  PubMed          Journal:  Hepatol Res        ISSN: 1386-6346            Impact factor:   4.288


  36 in total

1.  Comparative quantification of human intestinal bacteria based on cPCR and LDR/LCR.

Authors:  Zhou-Rui Tang; Kai Li; Yu-Xun Zhou; Zhen-Xian Xiao; Jun-Hua Xiao; Rui Huang; Guo-Hao Gu
Journal:  World J Gastroenterol       Date:  2012-01-21       Impact factor: 5.742

2.  Comparison of ligase detection reaction and real-time PCR for detection of low abundant YMDD mutants in patients with chronic hepatitis B.

Authors:  Xiao-Ling Wang; Song-Gang Xie; Ling Zhang; Wei-Xia Yang; Xing Wang; Hong-Zhi Jin
Journal:  World J Gastroenterol       Date:  2008-01-07       Impact factor: 5.742

3.  RET polymorphisms and the risk of Hirschsprung's disease in a Chinese population.

Authors:  Cuiping Liu; Lei Jin; Hui Li; Jintu Lou; Chunfen Luo; Xuewu Zhou; Ji-Cheng Li
Journal:  J Hum Genet       Date:  2008-07-08       Impact factor: 3.172

4.  A common variant on chromosome 9p21 affects the risk of early-onset coronary artery disease.

Authors:  Zhong Chen; Qi Qian; Genshan Ma; Jiahong Wang; Xiaoli Zhang; Yi Feng; Chengxing Shen; Yuyu Yao
Journal:  Mol Biol Rep       Date:  2008-05-06       Impact factor: 2.316

5.  Replication study of novel risk variants in six genes with type 2 diabetes and related quantitative traits in the Han Chinese lean individuals.

Authors:  Xiao Yun Bao; Bin Peng; Mao Sheng Yang
Journal:  Mol Biol Rep       Date:  2011-06-05       Impact factor: 2.316

6.  Association between C1431T polymorphism in peroxisome proliferator-activated receptor-γ gene and coronary artery disease in Chinese Han population.

Authors:  Xiang Zhou; Jianchang Chen; Weiting Xu
Journal:  Mol Biol Rep       Date:  2011-06-04       Impact factor: 2.316

7.  Toll-like receptor 8 polymorphism and coronary artery disease.

Authors:  Zhong Chen; Genshan Ma; Qi Qian; Yuyu Yao; Yi Feng; Chengchun Tang
Journal:  Mol Biol Rep       Date:  2008-11-05       Impact factor: 2.316

8.  Age-dependent association of KIBRA gene polymorphism with Alzheimer's disease in Han Chinese.

Authors:  Hui-Fu Wang; Lan Tan; Jin-Tai Yu; Xiao-Ying Ma; Qiu-Yan Liu; Wei Wang
Journal:  Mol Biol Rep       Date:  2013-11-05       Impact factor: 2.316

9.  Association of TOMM40 polymorphisms with late-onset Alzheimer's disease in a Northern Han Chinese population.

Authors:  Xiao-Ying Ma; Jin-Tai Yu; Wei Wang; Hui-Fu Wang; Qiu-Yan Liu; Wei Zhang; Lan Tan
Journal:  Neuromolecular Med       Date:  2013-01-04       Impact factor: 3.843

10.  Association study of four variants in KCNQ1 with type 2 diabetes mellitus and premature coronary artery disease in a Chinese population.

Authors:  Zhong Chen; Xiaofeng Zhang; Genshan Ma; Qi Qian; Yuyu Yao
Journal:  Mol Biol Rep       Date:  2009-07-03       Impact factor: 2.316

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