Literature DB >> 16499869

Human RFP2 gene promoter: unique structure and unusual strength.

Mikhail Skoblov1, Konstantin Shakhbazov, Dmitry Oshchepkov, Dmitry Ivanov, Anna Guskova, Dmitry Ivanov, Petr Rubtsov, Vladimir Prasolov, Nick Yankovsky, Ancha Baranova.   

Abstract

Human gene RFP2 is a candidate tumor suppressor located at 13q14.3 and deleted in multiple tumor types. To explore regulation of RFP2, we determined structure of the 5'-untranslated region of RFP2 gene and its promoter. RFP2 promoter area is TATA-less, highly enriched in G and C nucleotides, and contains multiple quadruplex forming GGGGA-repeats. Deletion analysis of 5'-flanking sequences demonstrated that repeat containing fragment possesses activity seven times exceeding that of the combined SV40 promoter/enhancer. Other unusual features of the RFP2 promoter include anomalously high electrostatic fields induced by sequence-dependent dipoles and very low nucleosome forming potential. A "minimized" version of the RFP2 promoter could be used for overexpression of the various transgenes in the mammalian cells.

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Year:  2006        PMID: 16499869      PMCID: PMC1994241          DOI: 10.1016/j.bbrc.2006.01.187

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  24 in total

1.  Nucleosome formation potential of eukaryotic DNA: calculation and promoters analysis.

Authors:  V G Levitsky; O A Podkolodnaya; N A Kolchanov; N L Podkolodny
Journal:  Bioinformatics       Date:  2001-11       Impact factor: 6.937

2.  Identifying DNA-binding proteins using structural motifs and the electrostatic potential.

Authors:  Hugh P Shanahan; Mario A Garcia; Susan Jones; Janet M Thornton
Journal:  Nucleic Acids Res       Date:  2004-09-08       Impact factor: 16.971

Review 3.  Moment-based prediction of DNA-binding proteins.

Authors:  Shandar Ahmad; Akinori Sarai
Journal:  J Mol Biol       Date:  2004-07-30       Impact factor: 5.469

4.  RFP2, c13ORF1, and FAM10A4 are the most likely tumor suppressor gene candidates for B-cell chronic lymphocytic leukemia.

Authors:  W J van Everdink; A Baranova; C Lummen; T Tyazhelova; M W G Looman; D Ivanov; E Verlind; A Pestova; H Faber; A Y van der Veen; N Yankovsky; E Vellenga; C H C M Buys
Journal:  Cancer Genet Cytogenet       Date:  2003-10-01

5.  Computational identification of promoters and first exons in the human genome.

Authors:  R V Davuluri; I Grosse; M Q Zhang
Journal:  Nat Genet       Date:  2001-12       Impact factor: 38.330

6.  Distinct organization of the candidate tumor suppressor gene RFP2 in human and mouse: multiple mRNA isoforms in both species- and human-specific antisense transcript RFP2OS.

Authors:  Ancha Baranova; Marianne Hammarsund; Dmitry Ivanov; Mikhail Skoblov; Olle Sangfelt; Martin Corcoran; Tatiana Borodina; Natalia Makeeva; Anna Pestova; Tatiana Tyazhelova; Svetlana Nazarenko; Francesco Gorreta; Tariq Alsheddi; Karen Schlauch; Eugene Nikitin; Bagrat Kapanadze; Dmitry Shagin; Andrey Poltaraus; Andrey Ivanovich Vorobiev; Eugene Zabarovsky; Sergey Lukianov; Vikas Chandhoke; Rachel Ibbotson; David Oscier; Stefan Einhorn; Dan Grander; Nick Yankovsky
Journal:  Gene       Date:  2003-12-04       Impact factor: 3.688

7.  G-rich oligonucleotide inhibits the binding of a nuclear protein to the Ki-ras promoter and strongly reduces cell growth in human carcinoma pancreatic cells.

Authors:  Susanna Cogoi; Franco Quadrifoglio; Luigi E Xodo
Journal:  Biochemistry       Date:  2004-03-09       Impact factor: 3.162

8.  Studies on transformation of Escherichia coli with plasmids.

Authors:  D Hanahan
Journal:  J Mol Biol       Date:  1983-06-05       Impact factor: 5.469

9.  TRANSFAC: transcriptional regulation, from patterns to profiles.

Authors:  V Matys; E Fricke; R Geffers; E Gössling; M Haubrock; R Hehl; K Hornischer; D Karas; A E Kel; O V Kel-Margoulis; D-U Kloos; S Land; B Lewicki-Potapov; H Michael; R Münch; I Reuter; S Rotert; H Saxel; M Scheer; S Thiele; E Wingender
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

10.  A new human gene KCNRG encoding potassium channel regulating protein is a cancer suppressor gene candidate located in 13q14.3.

Authors:  D V Ivanov; T V Tyazhelova; L Lemonnier; N Kononenko; A A Pestova; E A Nikitin; N Prevarskaya; R Skryma; Y V Panchin; N K Yankovsky; A V Baranova
Journal:  FEBS Lett       Date:  2003-03-27       Impact factor: 4.124

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  4 in total

1.  Cloning and characterization of squalene synthase gene from Fusarium fujikuroi (Saw.) Wr.

Authors:  Rui-Yu Zhao; Wei Xiao; Hai-Li Cheng; Ping Zhu; Ke-Di Cheng
Journal:  J Ind Microbiol Biotechnol       Date:  2010-06-29       Impact factor: 3.346

2.  Pro-apoptotic and antiproliferative activity of human KCNRG, a putative tumor suppressor in 13q14 region.

Authors:  Aybike Birerdinc; Elizabeth Nohelty; Andrey Marakhonov; Ganiraju Manyam; Ivan Panov; Stephanie Coon; Eugene Nikitin; Mikhail Skoblov; Vikas Chandhoke; Ancha Baranova
Journal:  Tumour Biol       Date:  2009-12-18

3.  A sequence-independent study of the influence of short loop lengths on the stability and topology of intramolecular DNA G-quadruplexes.

Authors:  Anthony Bugaut; Shankar Balasubramanian
Journal:  Biochemistry       Date:  2007-12-20       Impact factor: 3.162

4.  Cancer astrocytes have a more conserved molecular status in long recurrence free survival (RFS) IDH1 wild-type glioblastoma patients: new emerging cancer players.

Authors:  Sara Franceschi; Francesca Lessi; Paolo Aretini; Valerio Ortenzi; Cristian Scatena; Michele Menicagli; Marco La Ferla; Prospero Civita; Katia Zavaglia; Claudia Scopelliti; Alessandro Apollo; Francesco Giovanni Carbone; Riccardo Vannozzi; Generoso Bevilacqua; Francesco Pasqualetti; Antonio Giuseppe Naccarato; Chiara Maria Mazzanti
Journal:  Oncotarget       Date:  2018-05-08
  4 in total

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