Literature DB >> 16499626

Evolution of short sequence repeats in Mycobacterium tuberculosis.

Cath Arnold1, Nicola Thorne, Anthony Underwood, Kathleen Baster, Saheer Gharbia.   

Abstract

Whole genome comparison has revealed the presence of short sequence repeats (also called mycobacterial interspersed repeat units and variable number tandem repeat units) used for genotyping schemes. In this study, we have used deletion analysis, single nucleotide polymorphism data and spoligotype taken from published data from others to investigate the evolution of selected repeats that form the common denominators of the majority of established schemes. Analysis of the number of repeats per locus from over 400 isolates revealed that the general trend globally appears to be loss of repeats in modern strains compared with ancestral strains.

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Year:  2006        PMID： 16499626     DOI： 10.1111/j.1574-6968.2006.00142.x

Source DB:  PubMed          Journal:  FEMS Microbiol Lett        ISSN： 0378-1097            Impact factor:   2.742


  9 in total

1.  Mathematical modelling of Mycobacterium tuberculosis VNTR loci estimates a very slow mutation rate for the repeats.

Authors:  Andrew Grant; Catherine Arnold; Nicola Thorne; Saheer Gharbia; Anthony Underwood
Journal:  J Mol Evol       Date:  2008-05-06       Impact factor: 2.395

Review 2.  Myths and misconceptions: the origin and evolution of Mycobacterium tuberculosis.

Authors:  Noel H Smith; R Glyn Hewinson; Kristin Kremer; Roland Brosch; Stephen V Gordon
Journal:  Nat Rev Microbiol       Date:  2009-06-01       Impact factor: 60.633

3.  Construction of a virtual Mycobacterium tuberculosis consensus genome and its application to data from a next generation sequencer.

Authors:  Kayo Okumura; Masako Kato; Teruo Kirikae; Mitsunori Kayano; Tohru Miyoshi-Akiyama
Journal:  BMC Genomics       Date:  2015-03-20       Impact factor: 3.969

4.  Staphylococcus aureus from 152 cases of bovine, ovine and caprine mastitis investigated by Multiple-locus variable number of tandem repeat analysis (MLVA).

Authors:  Dominique Bergonier; Daniel Sobral; Andrea T Feßler; Eric Jacquet; Florence B Gilbert; Stefan Schwarz; Michaël Treilles; Philippe Bouloc; Christine Pourcel; Gilles Vergnaud
Journal:  Vet Res       Date:  2014-10-02       Impact factor: 3.683

5.  Discriminatory ability of hypervariable variable number tandem repeat loci in population-based analysis of Mycobacterium tuberculosis strains, London, UK.

Authors:  Preya Velji; Vladyslav Nikolayevskyy; Timothy Brown; Francis Drobniewski
Journal:  Emerg Infect Dis       Date:  2009-10       Impact factor: 6.883

6.  Mycobacterium tuberculosis complex lipid virulence factors preserved in the 17,000-year-old skeleton of an extinct bison, Bison antiquus.

Authors:  Oona Y-C Lee; Houdini H T Wu; Helen D Donoghue; Mark Spigelman; Charles L Greenblatt; Ian D Bull; Bruce M Rothschild; Larry D Martin; David E Minnikin; Gurdyal S Besra
Journal:  PLoS One       Date:  2012-07-30       Impact factor: 3.240

7.  Multispacer sequence typing for Mycobacterium tuberculosis genotyping.

Authors:  Zoheira Djelouadji; Catherine Arnold; Saheer Gharbia; Didier Raoult; Michel Drancourt
Journal:  PLoS One       Date:  2008-06-18       Impact factor: 3.240

8.  Limitations of variable number of tandem repeat typing identified through whole genome sequencing of Mycobacterium avium subsp. paratuberculosis on a national and herd level.

Authors:  Christina Ahlstrom; Herman W Barkema; Karen Stevenson; Ruth N Zadoks; Roman Biek; Rowland Kao; Hannah Trewby; Deb Haupstein; David F Kelton; Gilles Fecteau; Olivia Labrecque; Greg P Keefe; Shawn L B McKenna; Jeroen De Buck
Journal:  BMC Genomics       Date:  2015-03-08       Impact factor: 3.969

9.  Extensive Homoplasy but No Evidence of Convergent Evolution of Repeat Numbers at MIRU Loci in Modern Mycobacterium tuberculosis Lineages.

Authors:  Alexander C Outhred; Ulziijargal Gurjav; Peter Jelfs; Nadine McCallum; Qinning Wang; Grant A Hill-Cawthorne; Ben J Marais; Vitali Sintchenko
Journal:  Front Public Health       Date:  2020-08-27
  9 in total

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