Literature DB >> 16498699

Yeast systems biology to unravel the network of life.

Roberta Mustacchi1, Stefan Hohmann, Jens Nielsen.   

Abstract

Systems biology focuses on obtaining a quantitative description of complete biological systems, even complete cellular function. In this way, it will be possible to perform computer-guided design of novel drugs, advanced therapies for treatment of complex diseases, and to perform in silico design of advanced cell factories for production of fuels, chemicals, food ingredients and pharmaceuticals. The yeast Saccharomyces cerevisiae represents an excellent model system; the density of biological information available on this organism allows it to serve as a eukaryotic model for studying human diseases. Furthermore, it serves as an industrial workhorse for production of a wide range of chemicals and pharmaceuticals. Systems biology involves the combination of novel experimental techniques from different disciplines as well as functional genomics, bioinformatics and mathematical modelling, and hence no single laboratory has access to all the necessary competences. For this reason the Yeast Systems Biology Network (YSBN) has been established. YSBN will coordinate research efforts in yeast systems biology and, through the recently obtained EU funding for a Coordination Action, it will be possible to set appropriate guidelines, establish an appropriate infrastructure for the network and organize courses, meetings and conferences that will consolidate the network and promote systems biology. This paper discusses the impacts of systems biology and how YSBN may play a role in the future development of the field. Copyright 2006 John Wiley & Sons, Ltd.

Entities:  

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Year:  2006        PMID: 16498699     DOI: 10.1002/yea.1357

Source DB:  PubMed          Journal:  Yeast        ISSN: 0749-503X            Impact factor:   3.239


  13 in total

1.  Inhibition of copper uptake in yeast reveals the copper transporter Ctr1p as a potential molecular target of saxitoxin.

Authors:  Kathleen D Cusick; Steven C Minkin; Sheel C Dodani; Christopher J Chang; Steven W Wilhelm; Gary S Sayler
Journal:  Environ Sci Technol       Date:  2012-02-16       Impact factor: 9.028

2.  Effect of nutrient starvation on the cellular composition and metabolic capacity of Saccharomyces cerevisiae.

Authors:  Eva Albers; Christer Larsson; Thomas Andlid; Michael C Walsh; Lena Gustafsson
Journal:  Appl Environ Microbiol       Date:  2007-06-01       Impact factor: 4.792

Review 3.  Why are there still over 1000 uncharacterized yeast genes?

Authors:  Lourdes Peña-Castillo; Timothy R Hughes
Journal:  Genetics       Date:  2007-04-15       Impact factor: 4.562

4.  The challenges for molecular nutrition research 3: comparative nutrigenomics research as a basis for entering the systems level.

Authors:  Hannelore Daniel; Christian A Drevon; Ulla I Klein; Robert Kleemann; Ben van Ommen
Journal:  Genes Nutr       Date:  2008-10-01       Impact factor: 5.523

5.  Mouse retinal development: a dark horse model for systems biology research.

Authors:  Xia Zhang; Jeanne M Serb; M Heather West Greenlee
Journal:  Bioinform Biol Insights       Date:  2011-05-22

6.  Identification and comparative analysis of sixteen fungal peptidyl-prolyl cis/trans isomerase repertoires.

Authors:  Trevor J Pemberton
Journal:  BMC Genomics       Date:  2006-09-22       Impact factor: 3.969

7.  Synthesis of DNA fragments in yeast by one-step assembly of overlapping oligonucleotides.

Authors:  Daniel G Gibson
Journal:  Nucleic Acids Res       Date:  2009-09-10       Impact factor: 16.971

8.  Durable resistance to the wheat rusts: Integrating systems biology and traditional phenotype-based research methods to guide the deployment of resistance genes.

Authors:  Iago Lowe; Dario Cantu; Jorge Dubcovsky
Journal:  Euphytica       Date:  2011-05-01       Impact factor: 1.895

9.  Probability landscapes for integrative genomics.

Authors:  Annick Lesne; Arndt Benecke
Journal:  Theor Biol Med Model       Date:  2008-05-20       Impact factor: 2.432

10.  An alternative, arginase-independent pathway for arginine metabolism in Kluyveromyces lactis involves guanidinobutyrase as a key enzyme.

Authors:  G Romagnoli; M D Verhoeven; R Mans; Y Fleury Rey; R Bel-Rhlid; M van den Broek; R Maleki Seifar; A Ten Pierick; M Thompson; V Müller; S A Wahl; J T Pronk; J M Daran
Journal:  Mol Microbiol       Date:  2014-06-23       Impact factor: 3.501

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