Literature DB >> 16498467

A global view of genetic diversity in cultivated sorghums using a core collection.

M Deu1, F Rattunde, J Chantereau.   

Abstract

We report here an analysis of the structure of genetic diversity in cultivated sorghums. A core collection of 210 landraces representative of race, latitude of origin, response to day length, and production system was analysed with 74 RFLP probes dispersed throughout the genome. Multivariate analyses showed the specificity of the subrace guinea margaritiferum, as well as the geographical and racial pattern of genetic diversity. Neighbour-joining analysis revealed a clear differentiation between northern and southern equatorial African accessions. The presence of Asian accessions in these 2 major geographical poles for sorghum evolution indicated two introductions of sorghum into Asia. Morphological race also influenced the pattern of sorghum genetic diversity. A single predominant race was identified in 8 of 10 clusters of accessions, i.e., 1 kafir, 1 durra, 4 guinea, and 2 caudatum clusters. Guinea sorghums, with the exception of accessions in the margaritiferum subrace, clustered in 3 geographical groups, i.e., western African, southern African, and Asian guinea clusters; the latter two appeared more closely related. Caudatum were mainly distributed in 2 clusters, the African Great Lakes caudatum cluster and those African caudatum originating from other African regions. This last differentiation appears related to contrasting photoperiod responses. These results aid in the optimization of sampling accessions for introgression in breeding programs.

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Year:  2006        PMID: 16498467     DOI: 10.1139/g05-092

Source DB:  PubMed          Journal:  Genome        ISSN: 0831-2796            Impact factor:   2.166


  27 in total

1.  Local genetic diversity of sorghum in a village in northern Cameroon: structure and dynamics of landraces.

Authors:  Adeline Barnaud; Monique Deu; Eric Garine; Doyle McKey; Hélène I Joly
Journal:  Theor Appl Genet       Date:  2006-11-07       Impact factor: 5.699

2.  Genetic diversity for aluminum tolerance in sorghum.

Authors:  F F Caniato; C T Guimarães; R E Schaffert; V M C Alves; L V Kochian; A Borém; P E Klein; J V Magalhaes
Journal:  Theor Appl Genet       Date:  2007-01-25       Impact factor: 5.699

3.  Assessment of genetic diversity in the sorghum reference set using EST-SSR markers.

Authors:  P Ramu; C Billot; J-F Rami; S Senthilvel; H D Upadhyaya; L Ananda Reddy; C T Hash
Journal:  Theor Appl Genet       Date:  2013-05-25       Impact factor: 5.699

4.  Genetic diversity, structure, gene flow and evolutionary relationships within the Sorghum bicolor wild-weedy-crop complex in a western African region.

Authors:  Fabrice Sagnard; Monique Deu; Dékoro Dembélé; Raphaël Leblois; Lassana Touré; Mohamed Diakité; Caroline Calatayud; Michel Vaksmann; Sophie Bouchet; Yaya Mallé; Sabine Togola; Pierre C Sibiry Traoré
Journal:  Theor Appl Genet       Date:  2011-08-03       Impact factor: 5.699

5.  Genetic structure among sorghum landraces as revealed by morphological variation and microsatellite markers in three agroclimatic regions of Burkina Faso.

Authors:  Clarisse Barro-Kondombo; Fabrice Sagnard; Jacques Chantereau; Monique Deu; Kirsten Vom Brocke; Patrick Durand; Eric Gozé; Jean Didier Zongo
Journal:  Theor Appl Genet       Date:  2010-02-24       Impact factor: 5.699

6.  Genetic differentiation analysis for the identification of complementary parental pools for sorghum hybrid breeding in Ethiopia.

Authors:  Taye T Mindaye; Emma S Mace; Ian D Godwin; David R Jordan
Journal:  Theor Appl Genet       Date:  2015-05-30       Impact factor: 5.699

7.  Population genomic and genome-wide association studies of agroclimatic traits in sorghum.

Authors:  Geoffrey P Morris; Punna Ramu; Santosh P Deshpande; C Thomas Hash; Trushar Shah; Hari D Upadhyaya; Oscar Riera-Lizarazu; Patrick J Brown; Charlotte B Acharya; Sharon E Mitchell; James Harriman; Jeffrey C Glaubitz; Edward S Buckler; Stephen Kresovich
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-24       Impact factor: 11.205

8.  Variability of grain quality in sorghum: association with polymorphism in Sh2, Bt2, SssI, Ae1, Wx and O2.

Authors:  L F de Alencar Figueiredo; B Sine; J Chantereau; C Mestres; G Fliedel; J-F Rami; J-C Glaszmann; M Deu; B Courtois
Journal:  Theor Appl Genet       Date:  2010-06-22       Impact factor: 5.699

9.  Fine mapping of the Pc locus of Sorghum bicolor, a gene controlling the reaction to a fungal pathogen and its host-selective toxin.

Authors:  Ervin D Nagy; Tso-Ching Lee; Wusirika Ramakrishna; Zijun Xu; Patricia E Klein; Phillip SanMiguel; Chiu-Ping Cheng; Jingling Li; Katrien M Devos; Keith Schertz; Larry Dunkle; Jeffrey L Bennetzen
Journal:  Theor Appl Genet       Date:  2007-03-14       Impact factor: 5.699

10.  Niger-wide assessment of in situ sorghum genetic diversity with microsatellite markers.

Authors:  M Deu; F Sagnard; J Chantereau; C Calatayud; D Hérault; C Mariac; J-L Pham; Y Vigouroux; I Kapran; P S Traore; A Mamadou; B Gerard; J Ndjeunga; G Bezançon
Journal:  Theor Appl Genet       Date:  2008-02-14       Impact factor: 5.699

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