Literature DB >> 16497501

RNA specific molecules: cytotoxic plant alkaloid palmatine binds strongly to poly(A).

Prabal Giri1, Maidul Hossain, Gopinatha Suresh Kumar.   

Abstract

The cytotoxic plant alkaloid palmatine was found to bind strongly by partial intercalation to single stranded poly(A) structure with binding affinity (Ka) of (8.36+/-0.26) x 10(5) M(-1). The binding of palmatine was characterized to be exothermic and enthalpy driven with one palmatine for every two adenine residues. On the other hand, the binding to the double stranded poly(A) has been found to be significantly weak. This study identifies poly(A) as a potential bio-target for the alkaloid palmatine and its use as a lead compound in antitumor drug screening.

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Year:  2006        PMID: 16497501     DOI: 10.1016/j.bmcl.2006.01.124

Source DB:  PubMed          Journal:  Bioorg Med Chem Lett        ISSN: 0960-894X            Impact factor:   2.823


  9 in total

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Authors:  Motilal Maiti; Gopinatha Suresh Kumar
Journal:  J Nucleic Acids       Date:  2009-12-15

3.  Targeting RNA by small molecules: comparative structural and thermodynamic aspects of aristololactam-β-D-glucoside and daunomycin binding to tRNA(phe).

Authors:  Abhi Das; Kakali Bhadra; Gopinatha Suresh Kumar
Journal:  PLoS One       Date:  2011-08-16       Impact factor: 3.240

Review 4.  Natural and artificial binders of polyriboadenylic acid and their effect on RNA structure.

Authors:  Giovanni N Roviello; Domenica Musumeci; Valentina Roviello; Marina Pirtskhalava; Alexander Egoyan; Merab Mirtskhulava
Journal:  Beilstein J Nanotechnol       Date:  2015-06-17       Impact factor: 3.649

5.  A simple method for RNA isolation from various tissues of the tree Neolamarckia cadamba.

Authors:  Kunxi Ouyang; Juncheng Li; Hao Huang; Qingmin Que; Pei Li; Xiaoyang Chen
Journal:  Biotechnol Biotechnol Equip       Date:  2014-11-21       Impact factor: 1.632

6.  Nucleobase-Guanidiniocarbonyl-Pyrrole Conjugates as Novel Fluorimetric Sensors for Single Stranded RNA.

Authors:  Željka Ban; Biserka Žinić; Robert Vianello; Carsten Schmuck; Ivo Piantanida
Journal:  Molecules       Date:  2017-12-13       Impact factor: 4.411

7.  Diverse Isoquinoline Scaffolds by Ugi/Pomeranz-Fritsch and Ugi/Schlittler-Müller Reactions.

Authors:  Yuanze Wang; Pravin Patil; Katarzyna Kurpiewska; Justyna Kalinowska-Tluscik; Alexander Dömling
Journal:  Org Lett       Date:  2019-04-29       Impact factor: 6.005

8.  Binding of the 9-O-N-aryl/arylalkyl amino carbonyl methyl substituted berberine analogs to tRNA(phe.).

Authors:  Anirban Basu; Parasuraman Jaisankar; Gopinatha Suresh Kumar
Journal:  PLoS One       Date:  2013-03-19       Impact factor: 3.240

9.  Extraction optimization of Tinospora cordifolia and assessment of the anticancer activity of its alkaloid palmatine.

Authors:  Huma Ali; Savita Dixit
Journal:  ScientificWorldJournal       Date:  2013-11-28
  9 in total

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