Literature DB >> 16492786

Cooperativity in the self-assembly of porphyrin ladders.

Amaya Camara-Campos1, Christopher A Hunter, Salvador Tomas.   

Abstract

Cooperativity is a general feature of intermolecular interactions in biomolecular systems, but there are many different facets of the phenomenon that are not well understood. Positive cooperativity stabilizes a system as progressively more interactions are added, and the origin of the beneficial free energy may be entropic or enthalpic in origin. An "enthalpic chelate effect" has been proposed to operate through structural tightening that improves all of the functional group interactions in a complex, when it is more strongly bound. Here, we present direct calorimetric evidence that no such enthalpic effects exist in the cooperative assembly of supramolecular ladder complexes composed of metalloporphyrin oligomers coordinated to bipyridine ligands. The enthalpic contributions of the individual coordination interactions are 35 kJ.mol(-1) and constant over a range of free energies of self-assembly of -35 to -111 kJ.mol(-1). In rigid well defined systems of this type, the enthalpies of individual interactions are additive, and no enthalpic cooperative effects are apparent. The implication is that in more flexible, less well defined systems such as biomolecular assemblies, the enthalpy contributions available from specific functional group interactions are well defined and constant parameters.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16492786      PMCID: PMC1413879          DOI: 10.1073/pnas.0508071103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

1.  Evaluation of direct and cooperative contributions towards the strength of buried hydrogen bonds and salt bridges.

Authors:  S Albeck; R Unger; G Schreiber
Journal:  J Mol Biol       Date:  2000-05-05       Impact factor: 5.469

2.  Use of MM-PB/SA in estimating the free energies of proteins: application to native, intermediates, and unfolded villin headpiece.

Authors:  M R Lee; Y Duan; P A Kollman
Journal:  Proteins       Date:  2000-06-01

3.  Self-Assembly of Pentameric Porphyrin Light-Harvesting Antennae Complexes We thank the EPSRC (R.A.H.) and the Lister Institute (C.A.H.) for funding. V.S. and A.Y. thank the Swedish NFR and the K&A Wallenberg Foundation for financial support.

Authors: 
Journal:  Angew Chem Int Ed Engl       Date:  2000-10-16       Impact factor: 15.336

4.  Network of coupled promoting motions in enzyme catalysis.

Authors:  Pratul K Agarwal; Salomon R Billeter; P T Ravi Rajagopalan; Stephen J Benkovic; Sharon Hammes-Schiffer
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-26       Impact factor: 11.205

5.  ES/IS: estimation of conformational free energy by combining dynamics simulations with explicit solvent with an implicit solvent continuum model.

Authors:  Y N Vorobjev; J Hermans
Journal:  Biophys Chem       Date:  1999-04-05       Impact factor: 2.352

6.  Chemical triple-mutant boxes for quantifying cooperativity in intermolecular interactions.

Authors:  Christopher A Hunter; Philip S Jones; Pascale Tiger; Salvador Tomas
Journal:  Chemistry       Date:  2002-12-02       Impact factor: 5.236

7.  The role of backbone motions in ligand binding to the c-Src SH3 domain.

Authors:  C Wang; N H Pawley; L K Nicholson
Journal:  J Mol Biol       Date:  2001-11-02       Impact factor: 5.469

8.  Immucillin-H binding to purine nucleoside phosphorylase reduces dynamic solvent exchange.

Authors:  F Wang; R W Miles; G Kicska; E Nieves; V L Schramm; R H Angeletti
Journal:  Protein Sci       Date:  2000-09       Impact factor: 6.725

Review 9.  Can thermodynamic measurements of receptor binding yield information on drug affinity and efficacy?

Authors:  P A Borea; A Dalpiaz; K Varani; P Gilli; G Gilli
Journal:  Biochem Pharmacol       Date:  2000-12-01       Impact factor: 5.858

10.  Hydrogen exchange shows peptide binding stabilizes motions in Hck SH2.

Authors:  J R Engen; W H Gmeiner; T E Smithgall; D L Smith
Journal:  Biochemistry       Date:  1999-07-13       Impact factor: 3.162

View more
  6 in total

Review 1.  Allostery: absence of a change in shape does not imply that allostery is not at play.

Authors:  Chung-Jung Tsai; Antonio del Sol; Ruth Nussinov
Journal:  J Mol Biol       Date:  2008-02-29       Impact factor: 5.469

Review 2.  Analysis of cooperativity by isothermal titration calorimetry.

Authors:  Alan Brown
Journal:  Int J Mol Sci       Date:  2009-08-04       Impact factor: 5.923

3.  Molecular recognition and self-assembly special feature: Supramolecular polymer formed by reversible self-assembly of tetrakisporphyrin.

Authors:  Takeharu Haino; Takashi Fujii; Akihide Watanabe; Urara Takayanagi
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-16       Impact factor: 11.205

Review 4.  Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms.

Authors:  Chung-Jung Tsai; Antonio Del Sol; Ruth Nussinov
Journal:  Mol Biosyst       Date:  2009-01-06

5.  Multivalence cooperativity leading to "all-or-nothing" assembly: the case of nucleation-growth in supramolecular polymers.

Authors:  Elkin Lopez-Fontal; Lilia Milanesi; Salvador Tomas
Journal:  Chem Sci       Date:  2016-03-21       Impact factor: 9.825

6.  Thermodynamic insights into the entropically driven self-assembly of amphiphilic dyes in water.

Authors:  Pradeep P N Syamala; Bartolome Soberats; Daniel Görl; Stephan Gekle; Frank Würthner
Journal:  Chem Sci       Date:  2019-08-20       Impact factor: 9.825

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.