Literature DB >> 16490212

Quaternary polymorphism of replicative helicase G40P: structural mapping and domain rearrangement.

Rafael Núñez-Ramírez1, Yolanda Robledo, Pablo Mesa, Silvia Ayora, Juan Carlos Alonso, José María Carazo, Luis Enrique Donate.   

Abstract

Quaternary polymorphism is a distinctive structural feature of the DnaB family of replicative DNA hexameric helicases. The Bacillus subtilis bacteriophage SPP1 gene 40 product (G40P) belongs to this family. Three different quaternary states have been described for G40P homohexamers, two of them with C(3) symmetry, and the other with C(6) symmetry. We present three-dimensional reconstructions of the different architectures of G40P hexamers and a variant lacking the N-terminal domain. Comparison of the G40P and the deletion mutant structures sheds new light on the functional roles of the N and C-terminal domains, at the same time that it allows the direct structural mapping of these domains. Based on this new information, hybrid EM/X-ray models are presented for all the different symmetries. These results suggest that quaternary polymorphism of hexameric helicases may be implicated in the translocation along the DNA.

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Year:  2006        PMID: 16490212     DOI: 10.1016/j.jmb.2006.01.091

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  7 in total

1.  Image processing for electron microscopy single-particle analysis using XMIPP.

Authors:  Sjors H W Scheres; Rafael Núñez-Ramírez; Carlos O S Sorzano; José María Carazo; Roberto Marabini
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

2.  Mechanisms of opening and closing of the bacterial replicative helicase.

Authors:  Jillian Chase; Andrew Catalano; Alex J Noble; Edward T Eng; Paul Db Olinares; Kelly Molloy; Danaya Pakotiprapha; Martin Samuels; Brian Chait; Amedee des Georges; David Jeruzalmi
Journal:  Elife       Date:  2018-12-24       Impact factor: 8.140

3.  Repression of sigK intervening (skin) element gene expression by the CI-like protein SknR and effect of SknR depletion on growth of Bacillus subtilis cells.

Authors:  Tatsu Kimura; Yukie Amaya; Kazuo Kobayashi; Naotake Ogasawara; Tsutomu Sato
Journal:  J Bacteriol       Date:  2010-10-01       Impact factor: 3.490

4.  Introducing robustness to maximum-likelihood refinement of electron-microscopy data.

Authors:  Sjors H W Scheres; José María Carazo
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-06-20

5.  The domain structure of Helicobacter pylori DnaB helicase: the N-terminal domain can be dispensable for helicase activity whereas the extreme C-terminal region is essential for its function.

Authors:  Ram Gopal Nitharwal; Subhankar Paul; Ashraf Dar; Nirupam Roy Choudhury; Rajesh K Soni; Dhaneswar Prusty; Sukrat Sinha; Tara Kashav; Gauranga Mukhopadhyay; Tapan Kumar Chaudhuri; Samudrala Gourinath; Suman Kumar Dhar
Journal:  Nucleic Acids Res       Date:  2007-04-11       Impact factor: 16.971

6.  The crystal structure of the Thermus aquaticus DnaB helicase monomer.

Authors:  Scott Bailey; William K Eliason; Thomas A Steitz
Journal:  Nucleic Acids Res       Date:  2007-07-01       Impact factor: 16.971

Review 7.  Structural Study of Heterogeneous Biological Samples by Cryoelectron Microscopy and Image Processing.

Authors:  H E White; A Ignatiou; D K Clare; E V Orlova
Journal:  Biomed Res Int       Date:  2017-01-15       Impact factor: 3.411

  7 in total

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