Literature DB >> 16489333

Minimotif Miner: a tool for investigating protein function.

Sudha Balla1, Vishal Thapar, Snigdha Verma, Thaibinh Luong, Tanaz Faghri, Chun-Hsi Huang, Sanguthevar Rajasekaran, Jacob J del Campo, Jessica H Shinn, William A Mohler, Mark W Maciejewski, Michael R Gryk, Bryan Piccirillo, Stanley R Schiller, Martin R Schiller.   

Abstract

In addition to large domains, many short motifs mediate functional post-translational modification of proteins as well as protein-protein interactions and protein trafficking functions. We have constructed a motif database comprising 312 unique motifs and a web-based tool for identifying motifs in proteins. Functional motifs predicted by MnM can be ranked by several approaches, and we validated these scores by analyzing thousands of confirmed examples and by confirming prediction of previously unidentified 14-3-3 motifs in EFF-1.

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Year:  2006        PMID: 16489333     DOI: 10.1038/nmeth856

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  59 in total

1.  The minimotif synthesis hypothesis for the origin of life.

Authors:  Martin R Schiller
Journal:  J Transl Sci       Date:  2016-07-19

2.  Dusty protein kinases: primary structure, gene evolution, tissue specific expression and unique features of the catalytic domain.

Authors:  Jianbin Peng; Wenji Dong; Ying Chen; Rong Mo; Jan-Fang Cheng; Chi-Chung Hui; Narla Mohandas; Cheng-Han Huang
Journal:  Biochim Biophys Acta       Date:  2006-10-21

3.  AutoMotif Server for prediction of phosphorylation sites in proteins using support vector machine: 2007 update.

Authors:  Dariusz Plewczynski; Adrian Tkacz; Lucjan S Wyrwicz; Leszek Rychlewski; Krzysztof Ginalski
Journal:  J Mol Model       Date:  2007-11-08       Impact factor: 1.810

4.  Discovery of phosphorylation motif mixtures in phosphoproteomics data.

Authors:  Anna Ritz; Gregory Shakhnarovich; Arthur R Salomon; Benjamin J Raphael
Journal:  Bioinformatics       Date:  2008-11-07       Impact factor: 6.937

Review 5.  Viral infection and human disease--insights from minimotifs.

Authors:  Krishna Kadaveru; Jay Vyas; Martin R Schiller
Journal:  Front Biosci       Date:  2008-05-01

6.  C terminus of the P2X7 receptor: treasure hunting.

Authors:  Helio Miranda Costa-Junior; Flávia Sarmento Vieira; Robson Coutinho-Silva
Journal:  Purinergic Signal       Date:  2011-01-27       Impact factor: 3.765

7.  Uncovering a role for the tail of the Dictyostelium discoideum SadA protein in cell-substrate adhesion.

Authors:  Anthony S Kowal; Rex L Chisholm
Journal:  Eukaryot Cell       Date:  2011-03-25

8.  MinK-dependent internalization of the IKs potassium channel.

Authors:  Xianghua Xu; Vikram A Kanda; Eun Choi; Gianina Panaghie; Torsten K Roepke; Stephen A Gaeta; David J Christini; Daniel J Lerner; Geoffrey W Abbott
Journal:  Cardiovasc Res       Date:  2009-02-07       Impact factor: 10.787

9.  Evidence for the concerted evolution between short linear protein motifs and their flanking regions.

Authors:  Claudia Chica; Francesca Diella; Toby J Gibson
Journal:  PLoS One       Date:  2009-07-08       Impact factor: 3.240

10.  A proposed syntax for Minimotif Semantics, version 1.

Authors:  Jay Vyas; Ronald J Nowling; Mark W Maciejewski; Sanguthevar Rajasekaran; Michael R Gryk; Martin R Schiller
Journal:  BMC Genomics       Date:  2009-08-05       Impact factor: 3.969

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