Literature DB >> 16488908

Pedigree-drawing with R and graphviz.

Jing Hua Zhao1.   

Abstract

UNLABELLED: Two functions for pedigree-drawing available in R (http://www.r-project.org): plot.pedigree in kinship and pedtodot in gap are described. The latter requires graphviz (http://www.graphviz.org). They can produce many pedigree diagrams quickly into a single file, serving as alternatives to programs that only offer interactive use. AVAILABILITY: Packages kinship and gap are available from http://cran.r-project.org.

Mesh:

Year:  2006        PMID: 16488908     DOI: 10.1093/bioinformatics/btl058

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  7 in total

1.  The kinship2 R package for pedigree data.

Authors:  Jason P Sinnwell; Terry M Therneau; Daniel J Schaid
Journal:  Hum Hered       Date:  2014-07-29       Impact factor: 0.444

2.  Helium: visualization of large scale plant pedigrees.

Authors:  Paul D Shaw; Martin Graham; Jessie Kennedy; Iain Milne; David F Marshall
Journal:  BMC Bioinformatics       Date:  2014-08-01       Impact factor: 3.169

3.  Clinical software development for the Web: lessons learned from the BOADICEA project.

Authors:  Alex P Cunningham; Antonis C Antoniou; Douglas F Easton
Journal:  BMC Med Inform Decis Mak       Date:  2012-04-10       Impact factor: 2.796

4.  In silico analysis of HLA associations with drug-induced liver injury: use of a HLA-genotyped DNA archive from healthy volunteers.

Authors:  Ana Alfirevic; Faviel Gonzalez-Galarza; Catherine Bell; Klara Martinsson; Vivien Platt; Giovanna Bretland; Jane Evely; Maike Lichtenfels; Karin Cederbrant; Neil French; Dean Naisbitt; B Kevin Park; Andrew R Jones; Munir Pirmohamed
Journal:  Genome Med       Date:  2012-06-25       Impact factor: 11.117

5.  PedWiz: a web-based tool for pedigree informatics.

Authors:  Yeunjoo E Song; Robert C Elston
Journal:  Front Genet       Date:  2013-09-25       Impact factor: 4.599

6.  DMDtoolkit: a tool for visualizing the mutated dystrophin protein and predicting the clinical severity in DMD.

Authors:  Jiapeng Zhou; Jing Xin; Yayun Niu; Shiwen Wu
Journal:  BMC Bioinformatics       Date:  2017-02-02       Impact factor: 3.169

7.  Mobile-Based and Self-Service Tool (iPed) to Collect, Manage, and Visualize Pedigree Data: Development Study.

Authors:  Chen Sun; Jing Xu; Junxian Tao; Yu Dong; Haiyan Chen; Zhe Jia; Yingnan Ma; Mingming Zhang; Siyu Wei; Guoping Tang; Hongchao Lyu; Yongshuai Jiang
Journal:  JMIR Form Res       Date:  2022-06-23
  7 in total

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