Literature DB >> 16487753

A comprehensive survey of DNA-binding transcription factor gene expression in human fetal and adult organs.

Y Megan Kong1, Raymond J Macdonald, Xiaofei Wen, Peng Yang, Victor M Barbera, Galvin H Swift.   

Abstract

A global survey of RNA from 14 fetal and 12 adult human organs by RT-PCR determined the expression patterns of 790 genes encoding DNA-binding transcription factors. The data can be sorted to identify sets of transcription factors with expression relatively restricted to a given organ or to particular organ groups. These data are a resource to help define the spectrum of transcription factor control, contribute to the elucidation of transcription factor cascades responsible for the development and maintenance of each organ, and provide a baseline to study the effects of disease or developmental defects.

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Year:  2006        PMID: 16487753     DOI: 10.1016/j.modgep.2006.01.002

Source DB:  PubMed          Journal:  Gene Expr Patterns        ISSN: 1567-133X            Impact factor:   1.224


  10 in total

1.  Transcription factor expression in lipopolysaccharide-activated peripheral-blood-derived mononuclear cells.

Authors:  Jared C Roach; Kelly D Smith; Katie L Strobe; Stephanie M Nissen; Christian D Haudenschild; Daixing Zhou; Thomas J Vasicek; G A Held; Gustavo A Stolovitzky; Leroy E Hood; Alan Aderem
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-03       Impact factor: 11.205

2.  Research resource: nuclear hormone receptor expression in the endocrine pancreas.

Authors:  Jen-Chieh Chuang; Ji-Young Cha; James C Garmey; Raghavendra G Mirmira; Joyce J Repa
Journal:  Mol Endocrinol       Date:  2008-07-31

3.  Transcription factor modularity in a gene-centered C. elegans core neuronal protein-DNA interaction network.

Authors:  Vanessa Vermeirssen; M Inmaculada Barrasa; César A Hidalgo; Jenny Aurielle B Babon; Reynaldo Sequerra; Lynn Doucette-Stamm; Albert-László Barabási; Albertha J M Walhout
Journal:  Genome Res       Date:  2007-05-18       Impact factor: 9.043

4.  Detailed transcriptome atlas of the pancreatic beta cell.

Authors:  Burak Kutlu; David Burdick; David Baxter; Joanne Rasschaert; Daisy Flamez; Decio L Eizirik; Nils Welsh; Nathan Goodman; Leroy Hood
Journal:  BMC Med Genomics       Date:  2009-01-15       Impact factor: 3.063

5.  A genome-wide screen to identify transcription factors expressed in pelvic Ganglia of the lower urinary tract.

Authors:  Carrie B Wiese; Sara Ireland; Nicole L Fleming; Jing Yu; M Todd Valerius; Kylie Georgas; Han Sheng Chiu; Jane Brennan; Jane Armstrong; Melissa H Little; Andrew P McMahon; E Michelle Southard-Smith
Journal:  Front Neurosci       Date:  2012-09-12       Impact factor: 4.677

6.  A differential wiring analysis of expression data correctly identifies the gene containing the causal mutation.

Authors:  Nicholas J Hudson; Antonio Reverter; Brian P Dalrymple
Journal:  PLoS Comput Biol       Date:  2009-05-01       Impact factor: 4.475

7.  TFCat: the curated catalog of mouse and human transcription factors.

Authors:  Debra L Fulton; Saravanan Sundararajan; Gwenael Badis; Timothy R Hughes; Wyeth W Wasserman; Jared C Roach; Rob Sladek
Journal:  Genome Biol       Date:  2009-03-12       Impact factor: 13.583

8.  EPConDB: a web resource for gene expression related to pancreatic development, beta-cell function and diabetes.

Authors:  Joan M Mazzarelli; John Brestelli; Regina K Gorski; Junmin Liu; Elisabetta Manduchi; Deborah F Pinney; Jonathan Schug; Peter White; Klaus H Kaestner; Christian J Stoeckert
Journal:  Nucleic Acids Res       Date:  2006-10-27       Impact factor: 16.971

9.  Chronology of islet differentiation revealed by temporal cell labeling.

Authors:  Takeshi Miyatsuka; Zhongmei Li; Michael S German
Journal:  Diabetes       Date:  2009-05-28       Impact factor: 9.461

10.  Transcriptomic analysis of the lesser spotted catshark (Scyliorhinus canicula) pancreas, liver and brain reveals molecular level conservation of vertebrate pancreas function.

Authors:  John F Mulley; Adam D Hargreaves; Matthew J Hegarty; R Scott Heller; Martin T Swain
Journal:  BMC Genomics       Date:  2014-12-06       Impact factor: 3.969

  10 in total

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