Literature DB >> 16486256

Generalized models as a universal approach to the analysis of nonlinear dynamical systems.

Thilo Gross1, Ulrike Feudel.   

Abstract

We present a universal approach to the investigation of the dynamics in generalized models. In these models the processes that are taken into account are not restricted to specific functional forms. Therefore a single generalized models can describe a class of systems which share a similar structure. Despite this generality, the proposed approach allows us to study the dynamical properties of generalized models efficiently in the framework of local bifurcation theory. The approach is based on a normalization procedure that is used to identify natural parameters of the system. The Jacobian in a steady state is then derived as a function of these parameters. The analytical computation of local bifurcations using computer algebra reveals conditions for the local asymptotic stability of steady states and provides certain insights on the global dynamics of the system. The proposed approach yields a close connection between modelling and nonlinear dynamics. We illustrate the investigation of generalized models by considering examples from three different disciplines of science: a socioeconomic model of dynastic cycles in china, a model for a coupled laser system and a general ecological food web.

Year:  2006        PMID: 16486256     DOI: 10.1103/PhysRevE.73.016205

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  21 in total

1.  An empirical model of the Baltic Sea reveals the importance of social dynamics for ecological regime shifts.

Authors:  Steven J Lade; Susa Niiranen; Jonas Hentati-Sundberg; Thorsten Blenckner; Wiebren J Boonstra; Kirill Orach; Martin F Quaas; Henrik Österblom; Maja Schlüter
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-17       Impact factor: 11.205

2.  Structural kinetic modeling of metabolic networks.

Authors:  Ralf Steuer; Thilo Gross; Joachim Selbig; Bernd Blasius
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-31       Impact factor: 11.205

3.  How to predict community responses to perturbations in the face of imperfect knowledge and network complexity.

Authors:  Helge Aufderheide; Lars Rudolf; Thilo Gross; Kevin D Lafferty
Journal:  Proc Biol Sci       Date:  2013-11-06       Impact factor: 5.349

4.  Quantifying uncertainty in partially specified biological models: how can optimal control theory help us?

Authors:  M W Adamson; A Y Morozov; O A Kuzenkov
Journal:  Proc Math Phys Eng Sci       Date:  2016-09       Impact factor: 2.704

5.  On the stability of metabolic cycles.

Authors:  Ed Reznik; Daniel Segrè
Journal:  J Theor Biol       Date:  2010-07-29       Impact factor: 2.691

6.  Boolean versus continuous dynamics in modules with two feedback loops.

Authors:  Eva Ackermann; Eva Marie Weiel; Torsten Pfaff; Barbara Drossel
Journal:  Eur Phys J E Soft Matter       Date:  2012-10-26       Impact factor: 1.890

7.  Collapse of an ecological network in Ancient Egypt.

Authors:  Justin D Yeakel; Mathias M Pires; Lars Rudolf; Nathaniel J Dominy; Paul L Koch; Paulo R Guimarães; Thilo Gross
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-08       Impact factor: 11.205

8.  Predicting critical transitions in a model of systemic inflammation.

Authors:  Jeremy D Scheff; Steve E Calvano; Ioannis P Androulakis
Journal:  J Theor Biol       Date:  2013-08-21       Impact factor: 2.691

9.  A systems biology approach to analyse leaf carbohydrate metabolism in Arabidopsis thaliana.

Authors:  Sebastian Henkel; Thomas Nägele; Imke Hörmiller; Thomas Sauter; Oliver Sawodny; Michael Ederer; Arnd G Heyer
Journal:  EURASIP J Bioinform Syst Biol       Date:  2011-06-17

10.  Early warning signals for critical transitions: a generalized modeling approach.

Authors:  Steven J Lade; Thilo Gross
Journal:  PLoS Comput Biol       Date:  2012-02-02       Impact factor: 4.475

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