Literature DB >> 16483220

Diabatic free energy curves and coordination fluctuations for the aqueous Ag+Ag2+ redox couple: a biased Born-Oppenheimer molecular dynamics investigation.

Jochen Blumberger1, Ivano Tavernelli, Michael L Klein, Michiel Sprik.   

Abstract

Biased Born-Oppenheimer molecular dynamics simulations are performed to compute redox potential and free energy curves for the redox half reaction Ag(+)-->Ag(2+)+e(-) in aqueous solution. The potential energy surfaces of reactant and product state are linearly coupled and the system transferred from the reduced state to the oxidized state by variation of the coupling parameter from 0 to 1. The redox potential is obtained by thermodynamic integration of the average ionization energy of Ag(+). Diabatic free energy curves of reduced (R) and oxidized (O) states are obtained to good statistical accuracy by reweighting and combining the set of biased distributions of the ionization energy. The diabatic free energy curves of Ag(+) and Ag(2+) are parabolic over a wide range of the reaction coordinate in agreement with the linear response assumption that underlies Marcus theory. However, we observe deviations from parabolic behavior in the equilibrium region of Ag(+) and find different values for the reorganization free energy of R (1.4 eV) and O (0.9 eV). The computed reorganization free energy of Ag(2+) is in good agreement with the experimental estimate of 0.9-1.2 eV obtained from photoelectron spectroscopy. As suggested by our calculations, the moderate deviation from linear response behavior found for Ag(+) is likely related to the highly fluxional solvation shell of this ion, which exhibits water exchange reactions on the picosecond time scale of the present molecular dynamics simulation.

Entities:  

Year:  2006        PMID: 16483220     DOI: 10.1063/1.2162881

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  9 in total

1.  Role of protein frame and solvent for the redox properties of azurin from Pseudomonas aeruginosa.

Authors:  Michele Cascella; Alessandra Magistrato; Ivano Tavernelli; Paolo Carloni; Ursula Rothlisberger
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-18       Impact factor: 11.205

2.  Calculating solution redox free energies with ab initio quantum mechanical/molecular mechanical minimum free energy path method.

Authors:  Xiancheng Zeng; Hao Hu; Xiangqian Hu; Weitao Yang
Journal:  J Chem Phys       Date:  2009-04-28       Impact factor: 3.488

Review 3.  Free energies of chemical reactions in solution and in enzymes with ab initio quantum mechanics/molecular mechanics methods.

Authors:  Hao Hu; Weitao Yang
Journal:  Annu Rev Phys Chem       Date:  2008       Impact factor: 12.703

4.  Fragment-based Quantum Mechanical/Molecular Mechanical Simulations of Thermodynamic and Kinetic Process of the Ru2+-Ru3+ Self-Exchange Electron Transfer.

Authors:  Xiancheng Zeng; Xiangqian Hu; Weitao Yang
Journal:  J Chem Theory Comput       Date:  2012-12-11       Impact factor: 6.006

5.  Ab initio quantum mechanical/molecular mechanical simulation of electron transfer process: fractional electron approach.

Authors:  Xiancheng Zeng; Hao Hu; Xiangqian Hu; Aron J Cohen; Weitao Yang
Journal:  J Chem Phys       Date:  2008-03-28       Impact factor: 3.488

6.  Development and application of ab initio QM/MM methods for mechanistic simulation of reactions in solution and in enzymes.

Authors:  Hao Hu; Weitao Yang
Journal:  Theochem       Date:  2009-03-30

7.  Perspective on Diabatic Models of Chemical Reactivity as Illustrated by the Gas-Phase S(N)2 Reaction of Acetate Ion with 1,2-Dichloroethane.

Authors:  Rosendo Valero; Lingchun Song; Jiali Gao; Donald G Truhlar
Journal:  J Chem Theory Comput       Date:  2009-01-01       Impact factor: 6.006

8.  Accurate Quantum Mechanical/Molecular Mechanical Calculations of Reduction Potentials in Azurin Variants.

Authors:  Lin Shen; Xiancheng Zeng; Hao Hu; Xiangqian Hu; Weitao Yang
Journal:  J Chem Theory Comput       Date:  2018-08-10       Impact factor: 6.006

9.  Computation of Oxidation Potentials of Solvated Nucleobases by Static and Dynamic Multilayer Approaches.

Authors:  Jesús Lucia-Tamudo; Gustavo Cárdenas; Nuria Anguita-Ortiz; Sergio Díaz-Tendero; Juan J Nogueira
Journal:  J Chem Inf Model       Date:  2022-06-30       Impact factor: 6.162

  9 in total

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