Literature DB >> 16482307

Quantum chemical simulation of excited states of chlorophylls, bacteriochlorophylls and their complexes.

Juha Linnanto1, Jouko Korppi-Tommola.   

Abstract

The present review describes the use of quantum chemical methods in estimation of structures and electronic transition energies of photosynthetic pigments in vacuum, in solution and imbedded in proteins. Monomeric Mg-porphyrins, chlorophylls and bacteriochlorophylls and their solvent 1:1 and 1:2 complexes were studied. Calculations were performed for Mg-porphyrin, Mg-chlorin, Mg-bacteriochlorin, mesochlorophyll a, chlorophylls a, b, c(1), c(2), c(3), d and bacteriochlorophylls a, b, c, d, e, f, g, h, plus several homologues. Geometries were optimised with PM3, PM3/CISD, PM5, ab initio HF (6-31G*/6-311G**) and density functional B3LYP (6-31G*/6-311G**) methods. Spectroscopic transition energies were calculated with ZINDO/S CIS, PM3 CIS, PM3 CISD, ab initio CIS, time-dependent HF and time-dependent B3LYP methods. Estimates for experimental transition energies were obtained from linear correlations of the calculated transition energies of 1:1 solvent complexes against experimentally recorded solution energies (scaling). According to the calculations in five-coordinated solvent complexes the magnesium atom lies out of the porphyrin plane, while in six-coordinated complexes the porphyrin is nearly planar. Charge densities on magnesium and nitrogen atoms were strongly dependent on the computational method deployed. Several dark states of low oscillator strength below the main Soret band were predicted for solvent complexes and chlorophylls and bacteriochlorophylls in protein environment. Such states, though not yet identified experimentally, might serve as intermediate states for excitation energy transfer in photosynthetic complexes. Q(y), Q(x) and Soret transition energies were found to depend on the orientation of the acetyl group and external pressure. A method to estimate site energies and dimeric interaction energies and to simulate absorption and CD spectra of photosynthetic complexes is described. Simulations for the light harvesting complexes Rhodospirillum molischianum, chlorosomes of Chlorobium tepidum and Chloroflexus aurantiacus, and LHC-II of Spinacia oleracea are presented as examples.

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Year:  2005        PMID: 16482307     DOI: 10.1039/b513086g

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  19 in total

1.  From atomistic modeling to excitation transfer and two-dimensional spectra of the FMO light-harvesting complex.

Authors:  Carsten Olbrich; Thomas L C Jansen; Jörg Liebers; Mortaza Aghtar; Johan Strümpfer; Klaus Schulten; Jasper Knoester; Ulrich Kleinekathöfer
Journal:  J Phys Chem B       Date:  2011-06-14       Impact factor: 2.991

2.  Ligation of water to magnesium chelates of biological importance.

Authors:  Dorota Rutkowska-Zbik; Małgorzata Witko; Leszek Fiedor
Journal:  J Mol Model       Date:  2012-05-29       Impact factor: 1.810

3.  Excitation energy transfer in the LHC-II trimer: from carotenoids to chlorophylls in space and time.

Authors:  Jari Martiskainen; Robertas Kananavičius; Juha Linnanto; Heli Lehtivuori; Mika Keränen; Viivi Aumanen; Nikolai Tkachenko; Jouko Korppi-Tommola
Journal:  Photosynth Res       Date:  2011-02-02       Impact factor: 3.573

4.  Computational determination of the pigment binding motif in the chlorosome protein a of green sulfur bacteria.

Authors:  Sándor Á Kovács; William P Bricker; Dariusz M Niedzwiedzki; Peter F Colletti; Cynthia S Lo
Journal:  Photosynth Res       Date:  2013-12       Impact factor: 3.573

5.  Excited state dynamics in photosynthetic reaction center and light harvesting complex 1.

Authors:  Johan Strümpfer; Klaus Schulten
Journal:  J Chem Phys       Date:  2012-08-14       Impact factor: 3.488

6.  Theoretical characterization of excitation energy transfer in chlorosome light-harvesting antennae from green sulfur bacteria.

Authors:  Takatoshi Fujita; Joonsuk Huh; Semion K Saikin; Jennifer C Brookes; Alán Aspuru-Guzik
Journal:  Photosynth Res       Date:  2014-02-07       Impact factor: 3.573

7.  Uncovering dark multichromophoric states in Peridinin-Chlorophyll-Protein.

Authors:  Elliot J Taffet; Francesca Fassioli; Zi S D Toa; David Beljonne; Gregory D Scholes
Journal:  J R Soc Interface       Date:  2020-03-18       Impact factor: 4.118

8.  The role of axial ligands for the structure and function of chlorophylls.

Authors:  Jimmy Heimdal; Kasper P Jensen; Ajitha Devarajan; Ulf Ryde
Journal:  J Biol Inorg Chem       Date:  2006-09-05       Impact factor: 3.358

9.  Quest for spatially correlated fluctuations in the FMO light-harvesting complex.

Authors:  Carsten Olbrich; Johan Strümpfer; Klaus Schulten; Ulrich Kleinekathöfer
Journal:  J Phys Chem B       Date:  2010-12-10       Impact factor: 2.991

10.  Metallobacteriochlorophylls as potential dual agents for photodynamic therapy and chemotherapy.

Authors:  Dorota Rutkowska-Zbik; Małgorzata Witko
Journal:  J Mol Model       Date:  2013-01-12       Impact factor: 1.810

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