Literature DB >> 16481009

Invertibility of the TKF model of sequence evolution.

Bhalchandra D Thatte1.   

Abstract

We consider character sequences evolving on a phylogenetic tree under the TKF91 model. We show that as the sequence lengths tend to infinity the topology of the phylogenetic tree and the edge lengths are determined by any one of (a) the alignment of sequences (b) the collection of sequence lengths. We also show that the probability of any homology structure on a collection of sequences related by a TKF91 process on a tree is independent of the root location.

Mesh:

Year:  2006        PMID: 16481009     DOI: 10.1016/j.mbs.2005.12.025

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  2 in total

1.  Standard maximum likelihood analyses of alignments with gaps can be statistically inconsistent.

Authors:  Tandy Warnow
Journal:  PLoS Curr       Date:  2012-03-09

2.  Maximum Likelihood Phylogenetic Inference is Consistent on Multiple Sequence Alignments, with or without Gaps.

Authors:  Jakub Truszkowski; Nick Goldman
Journal:  Syst Biol       Date:  2015-11-28       Impact factor: 15.683

  2 in total

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