Literature DB >> 16474983

Long repeats in a huge genome: microsatellite loci in the grasshopper Chorthippus biguttulus.

Jana Ustinova1, Roland Achmann, Sylvia Cremer, Frieder Mayer.   

Abstract

It is commonly believed that both the average length and the frequency of microsatellites correlate with genome size. We have estimated the frequency and the average length for 69 perfect dinucleotide microsatellites in an insect with an exceptionally large genome: Chorthippus biguttulus (Orthoptera, Acrididae). Dinucleotide microsatellites are not more frequent in C. biguttulus, but repeat arrays are 1.4 to 2 times longer than in other insect species. The average repeat number in C. biguttulus lies in the range of higher vertebrates. Natural populations are highly variable. At least 30 alleles per locus were found and the expected heterozygosity is above 0.95 at all three loci studied. In contrast, the observed heterozygosity is much lower (< or = 0.51), which could be caused by long null alleles.

Entities:  

Mesh:

Year:  2006        PMID: 16474983     DOI: 10.1007/s00239-005-0022-6

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  50 in total

Review 1.  Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review.

Authors:  You-Chun Li; Abraham B Korol; Tzion Fahima; Avigdor Beiles; Eviatar Nevo
Journal:  Mol Ecol       Date:  2002-12       Impact factor: 6.185

2.  Microsatellite polymorphisms in a wild population of Drosophila melanogaster.

Authors:  P R England; D A Briscoe; R Frankham
Journal:  Genet Res       Date:  1996-06       Impact factor: 1.588

3.  Slippage synthesis of simple sequence DNA.

Authors:  C Schlötterer; D Tautz
Journal:  Nucleic Acids Res       Date:  1992-01-25       Impact factor: 16.971

4.  The relationship between microsatellite slippage mutation rate and the number of repeat units.

Authors:  Yinglei Lai; Fengzhu Sun
Journal:  Mol Biol Evol       Date:  2003-08-29       Impact factor: 16.240

5.  Genomic gigantism: DNA loss is slow in mountain grasshoppers.

Authors:  D Bensasson; D A Petrov; D X Zhang; D L Hartl; G M Hewitt
Journal:  Mol Biol Evol       Date:  2001-02       Impact factor: 16.240

6.  The distribution and frequency of microsatellite loci in Drosophila melanogaster.

Authors:  M D Schug; K A Wetterstrand; M S Gaudette; R H Lim; C M Hutter; C F Aquadro
Journal:  Mol Ecol       Date:  1998-01       Impact factor: 6.185

7.  High frequency of microsatellites in Drosophila pseudoobscura.

Authors:  R D Warner; M A Noor
Journal:  Genes Genet Syst       Date:  2000-04       Impact factor: 1.517

8.  Equilibrium distributions of microsatellite repeat length resulting from a balance between slippage events and point mutations.

Authors:  S Kruglyak; R T Durrett; M D Schug; C F Aquadro
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-01       Impact factor: 11.205

9.  Characterization of (GT)n and (CT)n microsatellites in two insect species: Apis mellifera and Bombus terrestris.

Authors:  A Estoup; M Solignac; M Harry; J M Cornuet
Journal:  Nucleic Acids Res       Date:  1993-03-25       Impact factor: 16.971

10.  Microsatellite allele frequencies in humans and chimpanzees, with implications for constraints on allele size.

Authors:  J C Garza; M Slatkin; N B Freimer
Journal:  Mol Biol Evol       Date:  1995-07       Impact factor: 16.240

View more
  8 in total

Review 1.  Mutational dynamics of microsatellites.

Authors:  Atul Bhargava; F F Fuentes
Journal:  Mol Biotechnol       Date:  2010-03       Impact factor: 2.695

2.  Next generation sequencing and FISH reveal uneven and nonrandom microsatellite distribution in two grasshopper genomes.

Authors:  Francisco J Ruiz-Ruano; Ángeles Cuadrado; Eugenia E Montiel; Juan Pedro M Camacho; María Dolores López-León
Journal:  Chromosoma       Date:  2014-11-12       Impact factor: 4.316

3.  Mining non-model genomic libraries for microsatellites: BAC versus EST libraries and the generation of allelic richness.

Authors:  Christopher K Ellison; Kerry L Shaw
Journal:  BMC Genomics       Date:  2010-07-12       Impact factor: 3.969

4.  Integrative genetic map of repetitive DNA in the sole Solea senegalensis genome shows a Rex transposon located in a proto-sex chromosome.

Authors:  Emilio García; Ismael Cross; Silvia Portela-Bens; María E Rodríguez; Aglaya García-Angulo; Belén Molina; Angeles Cuadrado; Thomas Liehr; Laureana Rebordinos
Journal:  Sci Rep       Date:  2019-11-20       Impact factor: 4.379

5.  The evolution of genome size in ants.

Authors:  Neil D Tsutsui; Andrew V Suarez; Joseph C Spagna; J Spencer Johnston
Journal:  BMC Evol Biol       Date:  2008-02-26       Impact factor: 3.260

6.  Patterned sequence in the transcriptome of vascular plants.

Authors:  Charles F Crane
Journal:  BMC Genomics       Date:  2007-06-15       Impact factor: 3.969

7.  Microsatellite organization in the grasshopper Abracris flavolineata (Orthoptera: Acrididae) revealed by FISH mapping: remarkable spreading in the A and B chromosomes.

Authors:  Diogo Milani; Diogo Cavalcanti Cabral-de-Mello
Journal:  PLoS One       Date:  2014-05-28       Impact factor: 3.240

8.  High-throughput sequencing and graph-based cluster analysis facilitate microsatellite development from a highly complex genome.

Authors:  Abhijeet B Shah; Holger Schielzeth; Andreas Albersmeier; Joern Kalinowski; Joseph I Hoffman
Journal:  Ecol Evol       Date:  2016-07-22       Impact factor: 2.912

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.