Literature DB >> 16474931

A puzzle in DNA biophysics.

R Bundschuh1, U Gerland.   

Abstract

In this issue, Lee et al. report the experimental temperature-dependence of the unzipping force for two natural DNA sequences. For both sequences, the curves show an anomaly at temperatures around 40 degrees C. In this brief contribution, we stress that the anomaly is not easily explained within the established theoretical models for the biophysics of DNA. As this puzzle questions our basic understanding of DNA, it must be resolved, most likely by a combination of additional experiments and new theoretical work.

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Year:  2006        PMID: 16474931     DOI: 10.1140/epje/i2005-10062-2

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  9 in total

1.  Reversible unfolding of single RNA molecules by mechanical force.

Authors:  J Liphardt; B Onoa; S B Smith; I Tinoco; C Bustamante
Journal:  Science       Date:  2001-04-27       Impact factor: 47.728

2.  Force-induced denaturation of RNA.

Authors:  U Gerland; R Bundschuh; T Hwa
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

3.  Mechanically probing the folding pathway of single RNA molecules.

Authors:  Ulrich Gerland; Ralf Bundschuh; Terence Hwa
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

Review 4.  DNA in a material world.

Authors:  Nadrian C Seeman
Journal:  Nature       Date:  2003-01-23       Impact factor: 49.962

5.  Mfold web server for nucleic acid folding and hybridization prediction.

Authors:  Michael Zuker
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

6.  Conformational changes in single-strand DNA as a function of temperature by SANS.

Authors:  J Zhou; S K Gregurick; S Krueger; F P Schwarz
Journal:  Biophys J       Date:  2005-10-28       Impact factor: 4.033

7.  Coupled dynamics of RNA folding and nanopore translocation.

Authors:  Ralf Bundschuh; Ulrich Gerland
Journal:  Phys Rev Lett       Date:  2005-11-10       Impact factor: 9.161

8.  Thermal stability of DNA.

Authors:  R D Blake; S G Delcourt
Journal:  Nucleic Acids Res       Date:  1998-07-15       Impact factor: 16.971

9.  A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics.

Authors:  J SantaLucia
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-17       Impact factor: 11.205

  9 in total

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