Literature DB >> 16474895

Molecular modelling of Jahn-Teller distortions in Cu(II)N6 complexes: elongations, compressions and the pathways in between.

Robert J Deeth1, Laura J A Hearnshaw.   

Abstract

Ligand Field Molecular Mechanics (LFMM) parameters have been optimised for six-coordinate Cu(II) complexes containing amine, pyridine, imidazole and pyrazine donors. As found in previous LFMM applications, the new parameters automatically generate distorted structures with the magnitudes of the Jahn-Teller elongations in good agreement with experiment. Here, we explore the rest of the potential energy surface. The introduction of axial strain drives the LFMM structures via rhombic geometries to the compressed structure, the latter corresponding to the saddle point between successive elongation axes. Calculated barrier heights between compressed and elongated geometries also agree well with available experimental data. In every case bar one, the LFMM predicts that the crystallographically observed elongation axis corresponds to the overall lowest energy well. The structural predictions are confirmed by independent density functional theory (DFT) optimisations. LFMM calculations on bis(2,5-pyrazolylpyridine)copper complexes display a smooth variation in structure as a function of pyrazolyl substituent from elongated for R = H through to fully compressed for R = (t)Bu. This behaviour is driven by the steric interactions with the ground state varying smoothly as a linear combination of {d(x2-y2)}1 and {d(z2)}1.

Entities:  

Year:  2005        PMID: 16474895     DOI: 10.1039/b509274d

Source DB:  PubMed          Journal:  Dalton Trans        ISSN: 1477-9226            Impact factor:   4.390


  4 in total

1.  An Angular Overlap Model for Cu(II) Ion in the AMOEBA Polarizable Force Field.

Authors:  Jin Yu Xiang; Jay W Ponder
Journal:  J Chem Theory Comput       Date:  2014       Impact factor: 6.006

2.  Structural and mechanistic insights into the oxy form of tyrosinase from molecular dynamics simulations.

Authors:  Robert J Deeth; Christian Diedrich
Journal:  J Biol Inorg Chem       Date:  2009-08-19       Impact factor: 3.358

3.  A valence bond model for aqueous Cu(II) and Zn(II) ions in the AMOEBA polarizable force field.

Authors:  Jin Yu Xiang; Jay W Ponder
Journal:  J Comput Chem       Date:  2012-12-05       Impact factor: 3.376

4.  Molecular modeling of zinc paddlewheel molecular complexes and the pores of a flexible metal organic framework.

Authors:  Khalid A H Alzahrani; Robert J Deeth
Journal:  J Mol Model       Date:  2016-03-15       Impact factor: 1.810

  4 in total

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