Literature DB >> 16472858

Evaluation of a novel short polyadenylation signal as an alternative to the SV40 polyadenylation signal.

Trevor J McFarland1, Yi Zhang, La-ongsri Atchaneeyaskul, Peter Francis, J Timothy Stout, Binoy Appukuttan.   

Abstract

The soluble neuropilin-1 (sNRP-1) gene employs an extremely short dual function polyadenylation (pA) signal/stop codon that is efficient for termination of gene transcription and translation in vivo. However, the functionality and usefulness of this signal in regard to other genes is unknown. This quantitative study compares the levels of humanized Renilla green fluorescent protein (hrGFP) mRNA polyadenylated with either the sNRP-1 pA signal or the much larger, more widely used SV40 pA signal. We show that the overall starting copy number of hrGFP for equally loaded RNAs is equivalent between the two groups. Our data show little to no difference between levels of mRNA generated by the sNRP-1 polyadenylation signal and the SV40 polyadenylation signal despite a remarkable size difference in signal length. An extremely short polyadenylation signal could potentially alleviate gene insert size restrictions associated with cloning or with therapeutic vectors such as adeno-associated virus.

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Year:  2006        PMID: 16472858     DOI: 10.1016/j.plasmid.2005.11.005

Source DB:  PubMed          Journal:  Plasmid        ISSN: 0147-619X            Impact factor:   3.466


  8 in total

Review 1.  Expressing Transgenes That Exceed the Packaging Capacity of Adeno-Associated Virus Capsids.

Authors:  Kyle Chamberlain; Jalish Mahmud Riyad; Thomas Weber
Journal:  Hum Gene Ther Methods       Date:  2016-02       Impact factor: 2.396

2.  Using TRIP for genome-wide position effect analysis in cultured cells.

Authors:  Waseem Akhtar; Alexey V Pindyurin; Johann de Jong; Ludo Pagie; Jelle Ten Hoeve; Anton Berns; Lodewyk F A Wessels; Bas van Steensel; Maarten van Lohuizen
Journal:  Nat Protoc       Date:  2014-05-08       Impact factor: 13.491

3.  RNA nucleation by MSL2 induces selective X chromosome compartmentalization.

Authors:  Claudia Isabelle Keller Valsecchi; M Felicia Basilicata; Plamen Georgiev; Aline Gaub; Janine Seyfferth; Tanvi Kulkarni; Amol Panhale; Giuseppe Semplicio; Vinitha Manjunath; Herbert Holz; Pouria Dasmeh; Asifa Akhtar
Journal:  Nature       Date:  2020-11-18       Impact factor: 49.962

4.  Adeno-Associated Viral Vectors as a Tool for Large Gene Delivery to the Retina.

Authors:  Ivana Trapani
Journal:  Genes (Basel)       Date:  2019-04-09       Impact factor: 4.096

5.  Synaptic Dysfunction in Human Neurons With Autism-Associated Deletions in PTCHD1-AS.

Authors:  P Joel Ross; Wen-Bo Zhang; Rebecca S F Mok; Kirill Zaslavsky; Eric Deneault; Lia D'Abate; Deivid C Rodrigues; Ryan K C Yuen; Muhammad Faheem; Marat Mufteev; Alina Piekna; Wei Wei; Peter Pasceri; Rebecca J Landa; Andras Nagy; Balazs Varga; Michael W Salter; Stephen W Scherer; James Ellis
Journal:  Biol Psychiatry       Date:  2019-07-29       Impact factor: 13.382

6.  Genetically targeted magnetic control of the nervous system.

Authors:  Michael A Wheeler; Cody J Smith; Matteo Ottolini; Bryan S Barker; Aarti M Purohit; Ryan M Grippo; Ronald P Gaykema; Anthony J Spano; Mark P Beenhakker; Sarah Kucenas; Manoj K Patel; Christopher D Deppmann; Ali D Güler
Journal:  Nat Neurosci       Date:  2016-03-07       Impact factor: 24.884

Review 7.  Recombinant Adeno-Associated Viral Vectors (rAAV)-Vector Elements in Ocular Gene Therapy Clinical Trials and Transgene Expression and Bioactivity Assays.

Authors:  Thilo M Buck; Jan Wijnholds
Journal:  Int J Mol Sci       Date:  2020-06-12       Impact factor: 5.923

8.  An efficient CRISPR-based strategy to insert small and large fragments of DNA using short homology arms.

Authors:  Oguz Kanca; Jonathan Zirin; Jorge Garcia-Marques; Shannon Marie Knight; Donghui Yang-Zhou; Gabriel Amador; Hyunglok Chung; Zhongyuan Zuo; Liwen Ma; Yuchun He; Wen-Wen Lin; Ying Fang; Ming Ge; Shinya Yamamoto; Karen L Schulze; Yanhui Hu; Allan C Spradling; Stephanie E Mohr; Norbert Perrimon; Hugo J Bellen
Journal:  Elife       Date:  2019-11-01       Impact factor: 8.140

  8 in total

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