Literature DB >> 16471820

Deprotonation of solvated formic acid: Car-Parrinello and metadynamics simulations.

Jung-Goo Lee1, Eliana Asciutto, Volodymyr Babin, Celeste Sagui, Thomas Darden, Christopher Roland.   

Abstract

The deprotonation of solvated formic acid was investigated theoretically with ab initio simulations. With the Car-Parrinello method, deprotonation and reprotonation by means of a proton wire were observed. The microscopics of these reactions were analyzed, and reveal the key role played by nearby water molecules in catalyzing the reactions. A constrained molecular dynamics calculation was carried out to estimate the dissociation free energy. Deprotonation of formic acid was further investigated with the recently developed metadynamics method using the formic acid oxygen coordination numbers as the collective variables. The determined free-energy landscape gives barriers similar to that obtained with the constrained free-energy calculation.

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Year:  2006        PMID: 16471820     DOI: 10.1021/jp055809i

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  3 in total

1.  The free energy landscape of small peptides as obtained from metadynamics with umbrella sampling corrections.

Authors:  Volodymyr Babin; Christopher Roland; Thomas A Darden; Celeste Sagui
Journal:  J Chem Phys       Date:  2006-11-28       Impact factor: 3.488

2.  QM/MM metadynamics study of the direct decarboxylation mechanism for orotidine-5'-monophosphate decarboxylase using two different QM regions: acceleration too small to explain rate of enzyme catalysis.

Authors:  Courtney L Stanton; I-Feng W Kuo; Christopher J Mundy; Teodoro Laino; K N Houk
Journal:  J Phys Chem B       Date:  2007-10-10       Impact factor: 2.991

3.  Ab Initio Molecular Dynamics Simulations of the Influence of Lithium Bromide Salt on the Deprotonation of Formic Acid in Aqueous Solution.

Authors:  Christopher D Daub; Lauri Halonen
Journal:  J Phys Chem B       Date:  2019-07-30       Impact factor: 2.991

  3 in total

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