Literature DB >> 16463132

Microbial community analysis of soils contaminated with lead, chromium and petroleum hydrocarbons.

Janet Joynt1, Marianne Bischoff, Ron Turco, Allan Konopka, Cindy H Nakatsu.   

Abstract

The impact on the microbial community of long-term environmental exposure to metal and organic contamination was investigated. Twenty-four soil samples were collected along a transect dug in soils contaminated with road paint and paint solvents, mainly toluene. Chemical analysis along the transect revealed a range from high to low concentrations of metals (lead and chromium) and organic solvent compounds. Principal components analysis of microbial community structure based on denaturing gradient gel electrophoresis of the V3 region of the 16S rRNA gene and fatty acid methyl esters derived from phospholipids (phospholipid fatty acid analysis) showing samples with similar fingerprints also had similar contaminant concentrations. There was also a weak positive correlation between microbial biomass and the organic carbon concentration. Results indicated that microbial populations are present despite some extreme contaminant levels in this mixed-waste contaminated site. Nucleotide sequence determination of the 16S rRNA gene indicated the presence of phylogenetically diverse bacteria belonging to the alpha-, beta-, gamma-, and delta-Proteobacteria, the high and low G + C Gram-positive bacteria, green nonsulfur, OP8, and others that did not group within a described division. This indicates that soils contaminated with both heavy metals and hydrocarbons for several decades have undergone changes in community composition, but still contain a phylogenetically diverse group of bacteria (including novel phylotypes) that warrant further investigation.

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Year:  2006        PMID: 16463132     DOI: 10.1007/s00248-005-0205-0

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  30 in total

1.  Microbial biomass and activity in lead-contaminated soil

Authors: 
Journal:  Appl Environ Microbiol       Date:  1999-05       Impact factor: 4.792

2.  Prokaryotic diversity--magnitude, dynamics, and controlling factors.

Authors:  Vigdis Torsvik; Lise Øvreås; Tron Frede Thingstad
Journal:  Science       Date:  2002-05-10       Impact factor: 47.728

3.  Phylogenetic analysis of bacterial communities in mesophilic and thermophilic bioreactors treating pharmaceutical wastewater.

Authors:  T M LaPara; C H Nakatsu; L Pantea; J E Alleman
Journal:  Appl Environ Microbiol       Date:  2000-09       Impact factor: 4.792

4.  Determining rates of change and evaluating group-level resiliency differences in hyporheic microbial communities in response to fluvial heavy-metal deposition.

Authors:  Kevin P Feris; Philip W Ramsey; Matthias Rillig; Johnnie N Moore; James E Gannon; William E Holben
Journal:  Appl Environ Microbiol       Date:  2004-08       Impact factor: 4.792

Review 5.  Novel techniques for analysing microbial diversity in natural and perturbed environments.

Authors:  V Torsvik; F L Daae; R A Sandaa; L Ovreås
Journal:  J Biotechnol       Date:  1998-09-17       Impact factor: 3.307

6.  High diversity in DNA of soil bacteria.

Authors:  V Torsvik; J Goksøyr; F L Daae
Journal:  Appl Environ Microbiol       Date:  1990-03       Impact factor: 4.792

7.  Influences of copper forms on the toxicity to microorganisms in soils.

Authors:  T Kunito; K Saeki; H Oyaizu; S Matsumoto
Journal:  Ecotoxicol Environ Saf       Date:  1999-10       Impact factor: 6.291

8.  Characterization of metal-resistant soil eubacteria by polymerase chain reaction--denaturing gradient gel electrophoresis with isolation of resistant strains.

Authors:  S Macnaughton; J R Stephen; Y J Chang; A Peacock; C A Flemming; K T Leung; D C White
Journal:  Can J Microbiol       Date:  1999-02       Impact factor: 2.419

9.  Effect of phenylurea herbicides on soil microbial communities estimated by analysis of 16S rRNA gene fingerprints and community-level physiological profiles.

Authors:  S el Fantroussi; L Verschuere; W Verstraete; E M Top
Journal:  Appl Environ Microbiol       Date:  1999-03       Impact factor: 4.792

10.  Association of microbial community composition and activity with lead, chromium, and hydrocarbon contamination.

Authors:  W Shi; J Becker; M Bischoff; R F Turco; A E Konopka
Journal:  Appl Environ Microbiol       Date:  2002-08       Impact factor: 4.792

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  29 in total

1.  Responses of the anaerobic bacterial community to addition of organic C in chromium(VI)- and iron(III)-amended microcosms.

Authors:  Peter S Kourtev; Cindy H Nakatsu; Allan Konopka
Journal:  Appl Environ Microbiol       Date:  2006-01       Impact factor: 4.792

2.  Identification and isolation of a Castellaniella species important during biostimulation of an acidic nitrate- and uranium-contaminated aquifer.

Authors:  Anne M Spain; Aaron D Peacock; Jonathan D Istok; Mostafa S Elshahed; Fares Z Najar; Bruce A Roe; David C White; Lee R Krumholz
Journal:  Appl Environ Microbiol       Date:  2007-06-08       Impact factor: 4.792

3.  Confocal laser scanning microscopy image analysis for cyanobacterial biomass determined at microscale level in different microbial mats.

Authors:  A Solé; E Diestra; I Esteve
Journal:  Microb Ecol       Date:  2008-11-04       Impact factor: 4.552

4.  The impact of zinc and lead concentrations and seasonal variation on bacterial and actinobacterial community structure in a metallophytic grassland soil.

Authors:  L Bamborough; S P Cummings
Journal:  Folia Microbiol (Praha)       Date:  2009-10-14       Impact factor: 2.099

5.  Effects of lead and zinc mining contamination on bacterial community diversity and enzyme activities of vicinal cropland.

Authors:  Juanjuan Qu; Guangming Ren; Bao Chen; Jinghua Fan; Yong E
Journal:  Environ Monit Assess       Date:  2011-04-15       Impact factor: 2.513

6.  Soil microbial community responses to additions of organic carbon substrates and heavy metals (Pb and Cr).

Authors:  Cindy H Nakatsu; Nadia Carmosini; Brett Baldwin; Federico Beasley; Peter Kourtev; Allan Konopka
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

7.  Use of metal-reducing bacteria for bioremediation of soil contaminated with mixed organic and inorganic pollutants.

Authors:  Keun-Young Lee; Julian Bosch; Rainer U Meckenstock
Journal:  Environ Geochem Health       Date:  2011-08-09       Impact factor: 4.609

8.  Trophic structure of amoeba communities near roots of Medicago sativa after contamination with fuel oil no. 6.

Authors:  Sandra Cortés-Pérez; Salvador Rodríguez-Zaragoza; Ma Remedios Mendoza-López
Journal:  Microb Ecol       Date:  2013-10-26       Impact factor: 4.552

9.  In situ determination of the effects of lead and copper on cyanobacterial populations in microcosms.

Authors:  Mireia Burnat; Elia Diestra; Isabel Esteve; Antonio Solé
Journal:  PLoS One       Date:  2009-07-10       Impact factor: 3.240

10.  Isolation and characterization of diuron-degrading bacteria from lotic surface water.

Authors:  Isabelle Batisson; Stéphane Pesce; Pascale Besse-Hoggan; Martine Sancelme; Jacques Bohatier
Journal:  Microb Ecol       Date:  2007-04-21       Impact factor: 4.552

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