Literature DB >> 16461727

Characterization of bacterial communities associated with deep-sea corals on Gulf of Alaska seamounts.

Kevin Penn1, Dongying Wu, Jonathan A Eisen, Naomi Ward.   

Abstract

Although microbes associated with shallow-water corals have been reported, deepwater coral microbes are poorly characterized. A cultivation-independent analysis of Alaskan seamount octocoral microflora showed that Proteobacteria (classes Alphaproteobacteria and Gammaproteobacteria), Firmicutes, Bacteroidetes, and Acidobacteria dominate and vary in abundance. More sampling is needed to understand the basis and significance of this variation.

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Substances：

Year:  2006        PMID： 16461727      PMCID： PMC1392894          DOI： 10.1128/AEM.72.2.1680-1683.2006

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  8 in total

1.  Diversity of thiosulfate-oxidizing bacteria from marine sediments and hydrothermal vents.

Authors:  A Teske; T Brinkhoff; G Muyzer; D P Moser; J Rethmeier; H W Jannasch
Journal:  Appl Environ Microbiol       Date:  2000-08       Impact factor: 4.792

2.  Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria.

Authors:  Jang-Cheon Cho; Stephen J Giovannoni
Journal:  Appl Environ Microbiol       Date:  2004-01       Impact factor: 4.792

3.  The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy.

Authors:  J R Cole; B Chai; T L Marsh; R J Farris; Q Wang; S A Kulam; S Chandra; D M McGarrell; T M Schmidt; G M Garrity; J M Tiedje
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

Review 4.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

5.  The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov.

Authors:  F A Rainey; N Ward-Rainey; R M Kroppenstedt; E Stackebrandt
Journal:  Int J Syst Bacteriol       Date:  1996-10

6.  Linking the composition of bacterioplankton to rapid turnover of dissolved dimethylsulphoniopropionate in an algal bloom in the North Sea.

Authors:  M V Zubkov; B M Fuchs; S D Archer; R P Kiene; R Amann; P H Burkill
Journal:  Environ Microbiol       Date:  2001-05       Impact factor: 5.491

7.  Bacterial community structure associated with a dimethylsulfoniopropionate-producing North Atlantic algal bloom.

Authors:  J M González; R Simó; R Massana; J S Covert; E O Casamayor; C Pedrós-Alió; M A Moran
Journal:  Appl Environ Microbiol       Date:  2000-10       Impact factor: 4.792

8.  Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species.

Authors:  V Farrelly; F A Rainey; E Stackebrandt
Journal:  Appl Environ Microbiol       Date:  1995-07       Impact factor: 4.792
  8 in total
  34 in total

1.  The bacterial community of the lithistid sponge Discodermia spp. as determined by cultivation and culture-independent methods.

Authors:  Wolfram M Brück; John K Reed; Peter J McCarthy
Journal:  Mar Biotechnol (NY)       Date:  2012-04-20       Impact factor: 3.619

2.  Isolation and characterization of a psychropiezophilic alphaproteobacterium.

Authors:  Emiley A Eloe; Francesca Malfatti; Jennifer Gutierrez; Kevin Hardy; Wilford E Schmidt; Kit Pogliano; Joe Pogliano; Farooq Azam; Douglas H Bartlett
Journal:  Appl Environ Microbiol       Date:  2011-09-23       Impact factor: 4.792

3.  Comparative analysis of acidobacterial genomic fragments from terrestrial and aquatic metagenomic libraries, with emphasis on acidobacteria subdivision 6.

Authors:  Anna M Kielak; Johannes A van Veen; George A Kowalchuk
Journal:  Appl Environ Microbiol       Date:  2010-08-20       Impact factor: 4.792

4.  Diversity of the bacterial communities associated with the azooxanthellate deep water octocorals Leptogorgia minimata, Iciligorgia schrammi, and Swiftia exertia.

Authors:  Thomas B Brück; Wolfram M Brück; Lory Z Santiago-Vázquez; Peter J McCarthy; Russell G Kerr
Journal:  Mar Biotechnol (NY)       Date:  2007-05-19       Impact factor: 3.619

5.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.

Authors:  Naomi L Ward; Jean F Challacombe; Peter H Janssen; Bernard Henrissat; Pedro M Coutinho; Martin Wu; Gary Xie; Daniel H Haft; Michelle Sait; Jonathan Badger; Ravi D Barabote; Brent Bradley; Thomas S Brettin; Lauren M Brinkac; David Bruce; Todd Creasy; Sean C Daugherty; Tanja M Davidsen; Robert T DeBoy; J Chris Detter; Robert J Dodson; A Scott Durkin; Anuradha Ganapathy; Michelle Gwinn-Giglio; Cliff S Han; Hoda Khouri; Hajnalka Kiss; Sagar P Kothari; Ramana Madupu; Karen E Nelson; William C Nelson; Ian Paulsen; Kevin Penn; Qinghu Ren; M J Rosovitz; Jeremy D Selengut; Susmita Shrivastava; Steven A Sullivan; Roxanne Tapia; L Sue Thompson; Kisha L Watkins; Qi Yang; Chunhui Yu; Nikhat Zafar; Liwei Zhou; Cheryl R Kuske
Journal:  Appl Environ Microbiol       Date:  2009-02-05       Impact factor: 4.792

6.  Diversity and antibacterial activity of the bacterial communities associated with two Mediterranean sea pens, Pennatula phosphorea and Pteroeides spinosum (Anthozoa: Octocorallia).

Authors:  E M D Porporato; A Lo Giudice; L Michaud; E De Domenico; N Spanò
Journal:  Microb Ecol       Date:  2013-07-02       Impact factor: 4.552

7.  Bacterial communities of the gorgonian octocoral Pseudopterogorgia elisabethae.

Authors:  Hebelin Correa; Brad Haltli; Carmenza Duque; Russell Kerr
Journal:  Microb Ecol       Date:  2013-08-04       Impact factor: 4.552

8.  Phenotype-specific bacterial communities in the cold-water coral Lophelia pertusa (Scleractinia) and their implications for the coral's nutrition, health, and distribution.

Authors:  Sven C Neulinger; Johanna Järnegren; Martin Ludvigsen; Karin Lochte; Wolf-Christian Dullo
Journal:  Appl Environ Microbiol       Date:  2008-10-10       Impact factor: 4.792

9.  An assessment of actinobacterial diversity in the marine environment.

Authors:  Paul R Jensen; Federico M Lauro
Journal:  Antonie Van Leeuwenhoek       Date:  2008-05-24       Impact factor: 2.271

10.  Culture-independent characterization of bacterial communities associated with the cold-water coral Lophelia pertusa in the northeastern Gulf of Mexico.

Authors:  Christina A Kellogg; John T Lisle; Julia P Galkiewicz
Journal:  Appl Environ Microbiol       Date:  2009-02-20       Impact factor: 4.792
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