Literature DB >> 16461020

Comparative ligand-binding analysis of ten human lipocalins.

Daniel A Breustedt1, Dorian L Schönfeld, Arne Skerra.   

Abstract

At least ten different lipocalins occur in the human body: retinol-binding protein (RBP), alpha1-acid glycoprotein, alpha1-microglobulin, apolipoprotein D, beta-trace protein, complement component 8gamma, glycodelin, neutrophil gelatinase-associated lipocalin, odorant-binding protein, and tear lipocalin. Although many of these lipocalins seem to play an important physiological role, their precise biological function is not always clear. Especially the interpretation of their diverse ligand-binding activities has been hampered by the fact that the natural lipocalins were prepared from different sources and with varying purity. Here we present a generic expression and purification strategy for the recombinant lipocalins, which is based on secretion into the periplasm of E. coli, where disulphide bonds are readily formed, followed by affinity purification via the Strep-tag II and gel filtration. The ten human lipocalins were successfully prepared and their ligand-binding activities were compared via fluorescence titration with a set of typical ligands: retinol, retinoic acid (RA), 11-(5-(dimethylamino)-1-naphthalene-sulfonylamino)undecanoic acid (DAUDA), and 8-anilino-1-naphtalene-sulfonic acid (ANS). As result, merely two lipocalins, RBP and beta-trace, revealed high affinities both for retinol and for RA, which probably reflects a specialized physiological function in retinoid complexation. Surprisingly, the strongest retinol affinity was detected for apolipoprotein D, whereas this lipocalin exhibits much weaker binding activity for retinoic acid. Binding studies with the two spectroscopic probes DAUDA and ANS revealed mixed patterns, which demonstrates that the affinity for lipophilic substances varies considerably among human lipocalins. Notably, RBP with its perfectly moulded retinol-binding site did not show any detectable binding activity for both compounds. Hence, our recombinant expression and purification system should be useful for further structural and functional studies of lipocalins from human origin and beyond.

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Year:  2006        PMID: 16461020     DOI: 10.1016/j.bbapap.2005.12.006

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  47 in total

1.  Steered molecular dynamics simulations of ligand-receptor interaction in lipocalins.

Authors:  Janne Kalikka; Jaakko Akola
Journal:  Eur Biophys J       Date:  2010-11-13       Impact factor: 1.733

Review 2.  Apolipoprotein D.

Authors:  Eric Rassart; Frederik Desmarais; Ouafa Najyb; Karl-F Bergeron; Catherine Mounier
Journal:  Gene       Date:  2020-06-15       Impact factor: 3.688

3.  Characterization of fluorescence of ANS-tear lipocalin complex: evidence for multiple-binding modes.

Authors:  Oktay K Gasymov; Adil R Abduragimov; Ben J Glasgow
Journal:  Photochem Photobiol       Date:  2007 Nov-Dec       Impact factor: 3.421

4.  An engineered lipocalin specific for CTLA-4 reveals a combining site with structural and conformational features similar to antibodies.

Authors:  D Schönfeld; G Matschiner; L Chatwell; S Trentmann; H Gille; M Hülsmeyer; N Brown; P M Kaye; S Schlehuber; A M Hohlbaum; A Skerra
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-05       Impact factor: 11.205

5.  A new crystal form of human tear lipocalin reveals high flexibility in the loop region and induced fit in the ligand cavity.

Authors:  Daniel A Breustedt; Lorenz Chatwell; Arne Skerra
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-09-16

6.  Ligand binding complexes in lipocalins: Underestimation of the stoichiometry parameter (n).

Authors:  Ben J Glasgow; Adil R Abduragimov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2018-07-07       Impact factor: 3.036

7.  A simple model-free method for direct assessment of fluorescent ligand binding by linear spectral summation.

Authors:  Oktay K Gasymov; Adil R Abduragimov; Ben J Glasgow
Journal:  J Fluoresc       Date:  2013-09-18       Impact factor: 2.217

8.  Neutrophil gelatinase-associated lipocalin expresses antimicrobial activity by interfering with L-norepinephrine-mediated bacterial iron acquisition.

Authors:  Marcus Miethke; Arne Skerra
Journal:  Antimicrob Agents Chemother       Date:  2010-01-19       Impact factor: 5.191

9.  A link between host plant adaptation and pesticide resistance in the polyphagous spider mite Tetranychus urticae.

Authors:  Wannes Dermauw; Nicky Wybouw; Stephane Rombauts; Björn Menten; John Vontas; Miodrag Grbic; Richard M Clark; René Feyereisen; Thomas Van Leeuwen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-17       Impact factor: 11.205

10.  Global deletion of lipocalin 2 does not reverse high-fat diet-induced obesity resistance in stearoyl-CoA desaturase-1 skin-specific knockout mice.

Authors:  Nicholas J Friedlander; Maggie S Burhans; Lacmbouh Ade; Lucas M O'Neill; Xiaoli Chen; James M Ntambi
Journal:  Biochem Biophys Res Commun       Date:  2014-02-15       Impact factor: 3.575

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