Literature DB >> 16455749

The LCB Data Warehouse.

Adam Ameur1, Vladimir Yankovski, Stefan Enroth, Ola Spjuth, Jan Komorowski.   

Abstract

UNLABELLED: The Linnaeus Centre for Bioinformatics Data Warehouse (LCB-DWH) is a web-based infrastructure for reliable and secure microarray gene expression data management and analysis that provides an online service for the scientific community. The LCB-DWH is an effort towards a complete system for storage (using the BASE system), analysis and publication of microarray data. Important features of the system include: access to established methods within R/Bioconductor for data analysis, built-in connection to the Gene Ontology database and a scripting facility for automatic recording and re-play of all the steps of the analysis. The service is up and running on a high performance server. At present there are more than 150 registered users. AVAILABILITY: An open functional version is available at https://dw.lcb.uu.se/index.phtml?i_login=test. User accounts are created upon request. Additional facilities including plug-ins, user documentation and a password protected data storage system are available from http://www.lcb.uu.se/lcbdw.php

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Mesh：

Year:  2006        PMID： 16455749     DOI： 10.1093/bioinformatics/btl036

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  10 in total

1.  Integrative epigenomic and genomic analysis of malignant pheochromocytoma.

Authors:  Johanna Sandgren; Robin Andersson; Alvaro Rada-Iglesias; Stefan Enroth; Goran Akerstrom; Jan P Dumanski; Jan Komorowski; Gunnar Westin; Claes Wadelius
Journal:  Exp Mol Med       Date:  2010-07-31       Impact factor: 8.718

2.  Phenotypically concordant and discordant monozygotic twins display different DNA copy-number-variation profiles.

Authors:  Carl E G Bruder; Arkadiusz Piotrowski; Antoinet A C J Gijsbers; Robin Andersson; Stephen Erickson; Teresita Diaz de Ståhl; Uwe Menzel; Johanna Sandgren; Desiree von Tell; Andrzej Poplawski; Michael Crowley; Chiquito Crasto; E Christopher Partridge; Hemant Tiwari; David B Allison; Jan Komorowski; Gert-Jan B van Ommen; Dorret I Boomsma; Nancy L Pedersen; Johan T den Dunnen; Karin Wirdefeldt; Jan P Dumanski
Journal:  Am J Hum Genet       Date:  2008-02-14       Impact factor: 11.025

3.  Novel amplifications in pediatric medulloblastoma identified by genome-wide copy number profiling.

Authors:  Helena Nord; Susan Pfeifer; Pelle Nilsson; Johanna Sandgren; Svetlana Popova; Bo Strömberg; Irina Alafuzoff; Monica Nistér; Teresita Díaz de Ståhl
Journal:  J Neurooncol       Date:  2011-10-07       Impact factor: 4.130

4.  Butyrate mediates decrease of histone acetylation centered on transcription start sites and down-regulation of associated genes.

Authors:  Alvaro Rada-Iglesias; Stefan Enroth; Adam Ameur; Christoph M Koch; Gayle K Clelland; Patricia Respuela-Alonso; Sarah Wilcox; Oliver M Dovey; Peter D Ellis; Cordelia F Langford; Ian Dunham; Jan Komorowski; Claes Wadelius
Journal:  Genome Res       Date:  2007-06       Impact factor: 9.043

5.  Characterization of novel and complex genomic aberrations in glioblastoma using a 32K BAC array.

Authors:  Helena Nord; Christian Hartmann; Robin Andersson; Uwe Menzel; Susan Pfeifer; Arkadiusz Piotrowski; Adam Bogdan; Wojciech Kloc; Johanna Sandgren; Tommie Olofsson; Göran Hesselager; Erik Blomquist; Jan Komorowski; Andreas von Deimling; Carl E G Bruder; Jan P Dumanski; Teresita Díaz de Ståhl
Journal:  Neuro Oncol       Date:  2009-12       Impact factor: 12.300

6.  Age dependence of tumor genetics in unfavorable neuroblastoma: arrayCGH profiles of 34 consecutive cases, using a Swedish 25-year neuroblastoma cohort for validation.

Authors:  Cihan Cetinkaya; Tommy Martinsson; Johanna Sandgren; Catarina Träger; Per Kogner; Jan Dumanski; Teresita Díaz de Ståhl; Fredrik Hedborg
Journal:  BMC Cancer       Date:  2013-05-09       Impact factor: 4.430

7.  Creating views on integrated multidomain data.

Authors:  Hendrik Rohn; Christian Klukas; Falk Schreiber
Journal:  Bioinformatics       Date:  2011-05-06       Impact factor: 6.937

8.  MiMiR--an integrated platform for microarray data sharing, mining and analysis.

Authors:  Chris Tomlinson; Manjula Thimma; Stelios Alexandrakis; Tito Castillo; Jayne L Dennis; Anthony Brooks; Thomas Bradley; Carly Turnbull; Ekaterini Blaveri; Geraint Barton; Norie Chiba; Klio Maratou; Pat Soutter; Tim Aitman; Laurence Game
Journal:  BMC Bioinformatics       Date:  2008-09-18       Impact factor: 3.169

9.  Transcript profiling of two potato cultivars during glycoalkaloid-inducing treatments shows differential expression of genes in sterol and glycoalkaloid metabolism.

Authors:  Nurun Nahar; Erik Westerberg; Usman Arif; Alexandre Huchelmann; Alexandra Olarte Guasca; Lisa Beste; Kerstin Dalman; Paresh C Dutta; Lisbeth Jonsson; Folke Sitbon
Journal:  Sci Rep       Date:  2017-03-03       Impact factor: 4.379

10.  SiPaGene: A new repository for instant online retrieval, sharing and meta-analyses of GeneChip expression data.

Authors:  Adriane Menssen; Götz Edinger; Joachim R Grün; Ulrike Haase; Ria Baumgrass; Andreas Grützkau; Andreas Radbruch; Gerd-R Burmester; Thomas Häupl
Journal:  BMC Genomics       Date:  2009-03-05       Impact factor: 3.969
  10 in total

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