Literature DB >> 16452926

Transcription in four dimensions: nuclear receptor-directed initiation of gene expression.

Raphaël Métivier1, George Reid, Frank Gannon.   

Abstract

Regulated gene expression, achieved through the coordinated assembly of transcription factors, co-regulators and the basal transcription machinery on promoters, is an initial step in accomplishing cell specificity and homeostasis. Traditional models of transcriptional regulation tend to be static, although gene expression profiles change with time to adapt to developmental and environmental cues. Furthermore, biochemical and structural studies have determined that initiation of transcription progresses through a series of ordered events. By integrating time into the analysis of transcription, chromatin immunoprecipitation assays and live-cell imaging techniques have revealed the dynamic, cooperative, functionally redundant and cyclical nature of gene expression. In this review, we present a dynamic model of gene transcription that integrates data obtained by these two techniques.

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Year:  2006        PMID: 16452926      PMCID: PMC1369254          DOI: 10.1038/sj.embor.7400626

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  73 in total

Review 1.  Nuclear structure, gene expression and development.

Authors:  K Brown
Journal:  Crit Rev Eukaryot Gene Expr       Date:  1999       Impact factor: 1.807

Review 2.  The RNA polymerase II core promoter.

Authors:  Stephen T Smale; James T Kadonaga
Journal:  Annu Rev Biochem       Date:  2003-03-19       Impact factor: 23.643

Review 3.  The nucleosome: from genomic organization to genomic regulation.

Authors:  Sepideh Khorasanizadeh
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

Review 4.  ATP-dependent nucleosome remodeling complexes: enzymes tailored to deal with chromatin.

Authors:  Saïd Sif
Journal:  J Cell Biochem       Date:  2004-04-15       Impact factor: 4.429

Review 5.  Mi-2/NuRD: multiple complexes for many purposes.

Authors:  Nathan J Bowen; Naoyuki Fujita; Masahiro Kajita; Paul A Wade
Journal:  Biochim Biophys Acta       Date:  2004-03-15

Review 6.  Dynamics of nuclear receptor movement and transcription.

Authors:  Gordon L Hager; Akhilesh K Nagaich; Thomas A Johnson; Dawn A Walker; Sam John
Journal:  Biochim Biophys Acta       Date:  2004-03-15

Review 7.  RNA polymerase II structure, and organization of the preinitiation complex.

Authors:  Francisco J Asturias
Journal:  Curr Opin Struct Biol       Date:  2004-04       Impact factor: 6.809

8.  Recruitment of distinct chromatin-modifying complexes by tamoxifen-complexed estrogen receptor at natural target gene promoters in vivo.

Authors:  Xue-Feng Liu; Milan K Bagchi
Journal:  J Biol Chem       Date:  2004-01-13       Impact factor: 5.157

9.  Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter.

Authors:  Raphaël Métivier; Graziella Penot; Michael R Hübner; George Reid; Heike Brand; Martin Kos; Frank Gannon
Journal:  Cell       Date:  2003-12-12       Impact factor: 41.582

10.  Network of dynamic interactions between histone H1 and high-mobility-group proteins in chromatin.

Authors:  Frédéric Catez; Huan Yang; Kevin J Tracey; Raymond Reeves; Tom Misteli; Michael Bustin
Journal:  Mol Cell Biol       Date:  2004-05       Impact factor: 4.272

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  73 in total

1.  DGCR14 induces Il17a gene expression through the RORγ/BAZ1B/RSKS2 complex.

Authors:  Ichiro Takada
Journal:  Mol Cell Biol       Date:  2014-11-03       Impact factor: 4.272

2.  Analytical distribution and tunability of noise in a model of promoter progress.

Authors:  Jiajun Zhang; Luonan Chen; Tianshou Zhou
Journal:  Biophys J       Date:  2012-03-20       Impact factor: 4.033

3.  Inhibition of BET proteins impairs estrogen-mediated growth and transcription in breast cancers by pausing RNA polymerase advancement.

Authors:  Surojeet Sengupta; Michael C Biarnes; Robert Clarke; V Craig Jordan
Journal:  Breast Cancer Res Treat       Date:  2015-02-27       Impact factor: 4.872

4.  Rapid accessibility of nucleosomal DNA in yeast on a second time scale.

Authors:  Andrea Bucceri; Kristin Kapitza; Fritz Thoma
Journal:  EMBO J       Date:  2006-06-15       Impact factor: 11.598

Review 5.  Dynamics of coactivator recruitment and chromatin modifications during nuclear receptor mediated transcription.

Authors:  Sayura Aoyagi; Trevor K Archer
Journal:  Mol Cell Endocrinol       Date:  2007-09-05       Impact factor: 4.102

6.  Testis-specific protein on Y chromosome (TSPY) represses the activity of the androgen receptor in androgen-dependent testicular germ-cell tumors.

Authors:  Chihiro Akimoto; Takashi Ueda; Kazuki Inoue; Ikuko Yamaoka; Matomo Sakari; Wataru Obara; Tomoaki Fujioka; Akira Nagahara; Norio Nonomura; Syuichi Tsutsumi; Hiroyuki Aburatani; Tsuneharu Miki; Takahiro Matsumoto; Hirochika Kitagawa; Shigeaki Kato
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-01       Impact factor: 11.205

Review 7.  Minireview: the SRC family of coactivators: an entrée to understanding a subset of polygenic diseases?

Authors:  David M Lonard; Rakesh Kumar; Bert W O'Malley
Journal:  Mol Endocrinol       Date:  2009-10-21

8.  Divergent Binding and Transactivation by Two Related Steroid Receptors at the Same Response Element.

Authors:  Martina Tesikova; Xavier Dezitter; Hatice Z Nenseth; Tove I Klokk; Florian Mueller; Gordon L Hager; Fahri Saatcioglu
Journal:  J Biol Chem       Date:  2016-04-07       Impact factor: 5.157

9.  ICEC0942, an Orally Bioavailable Selective Inhibitor of CDK7 for Cancer Treatment.

Authors:  Hetal Patel; Manikandan Periyasamy; Georgina P Sava; Alexander Bondke; Brian W Slafer; Sebastian H B Kroll; Marion Barbazanges; Richard Starkey; Silvia Ottaviani; Alison Harrod; Eric O Aboagye; Laki Buluwela; Matthew J Fuchter; Anthony G M Barrett; R Charles Coombes; Simak Ali
Journal:  Mol Cancer Ther       Date:  2018-03-15       Impact factor: 6.261

10.  Nicotinamide uncouples hormone-dependent chromatin remodeling from transcription complex assembly.

Authors:  Sayura Aoyagi; Trevor K Archer
Journal:  Mol Cell Biol       Date:  2007-10-22       Impact factor: 4.272

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