Literature DB >> 16452111

MAMMOT--a set of tools for the design, management and visualization of genomic tiling arrays.

E Ryder1, R Jackson, A Ferguson-Smith, S Russell.   

Abstract

UNLABELLED: The MAMMOT software suite is a collection of Perl and PHP scripts for designing, annotating and visualizing genome tiling arrays to, for example, facilitate studies into the epigenetics of gene regulation. The web design allows rapid experimental data entry from multiple users, and results can easily be shared between groups and individuals. AVAILABILITY: http://www.mammot.org.uk/ CONTACT: e.ryder@gen.cam.ac.uk.

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Mesh：

Year:  2006        PMID： 16452111     DOI： 10.1093/bioinformatics/btl031

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  6 in total

1.  ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data.

Authors:  Lihua J Zhu; Claude Gazin; Nathan D Lawson; Hervé Pagès; Simon M Lin; David S Lapointe; Michael R Green
Journal:  BMC Bioinformatics       Date:  2010-05-11       Impact factor: 3.169

2.  Processing and analyzing ChIP-seq data: from short reads to regulatory interactions.

Authors:  Marion Leleu; Grégory Lefebvre; Jacques Rougemont
Journal:  Brief Funct Genomics       Date:  2010-09-22       Impact factor: 4.241

3.  chipD: a web tool to design oligonucleotide probes for high-density tiling arrays.

Authors:  Yann S Dufour; Gary E Wesenberg; Andrew J Tritt; Jeremy D Glasner; Nicole T Perna; Julie C Mitchell; Timothy J Donohue
Journal:  Nucleic Acids Res       Date:  2010-06-06       Impact factor: 16.971

4.  Flexible and efficient genome tiling design with penalized uniqueness score.

Authors:  Yang Du; Eduard Murani; Siriluck Ponsuksili; Klaus Wimmers
Journal:  BMC Bioinformatics       Date:  2012-12-05       Impact factor: 3.169

5.  An evaluation of custom microarray applications: the oligonucleotide design challenge.

Authors:  Sophie Lemoine; Florence Combes; Stéphane Le Crom
Journal:  Nucleic Acids Res       Date:  2009-02-10       Impact factor: 16.971

6.  Optimized design and assessment of whole genome tiling arrays.

Authors:  Stefan Gräf; Fiona G G Nielsen; Stefan Kurtz; Martijn A Huynen; Ewan Birney; Henk Stunnenberg; Paul Flicek
Journal:  Bioinformatics       Date:  2007-07-01       Impact factor: 6.937
  6 in total

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