Literature DB >> 16446277

AMiGA: the arthropodan mitochondrial genomes accessible database.

Pedro Cipriano Feijão1, Lissiene Silva Neiva, Ana Maria Lima de Azeredo-Espin, Ana Cláudia Lessinger.   

Abstract

UNLABELLED: The Arthropodan Mitochondrial Genomes Accessible database (AMiGA) is a relational database developed to help in managing access to the increasing amount of data arising from developments in arthropodan mitochondrial genomics (136 mitochondrial genomes as of September 2005). The strengths of AMiGA include (1) a more accessible and up-to-date database containing a more comprehensive set of mitochondrial genomes for this phylum, (2) the provision of flexible search options for retrieving detailed information such as bibliographical data, genomic graphics, FASTA sequences and taxonomical status, (3) the possibility of enhanced comparative analyses by multiple alignment of single or concatenated sets of genes, (4) more accurate and updated information resulting from a specific curation process called AMiGA Notes and (5) the possibility of including unpublished sequences in a password-restricted area for comparative analysis with the other sequences stored in the database. AVAILABILITY: http://amiga.cbmeg.unicamp.br CONTACT: lessinger@amiga.cbmeg.unicamp.br SUPPLEMENTARY INFORMATION: Detailed information, including an illustrated tutorial, is available from the above URL.

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Year:  2006        PMID: 16446277     DOI: 10.1093/bioinformatics/btl021

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  17 in total

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Journal:  Mol Biol Rep       Date:  2010-11-23       Impact factor: 2.316

2.  Complete mitochondrial genomes of two gelechioids, Mesophleps albilinella and Dichomeris ustalella (Lepidoptera: Gelechiidae), with a description of gene rearrangement in Lepidoptera.

Authors:  Jeong Sun Park; Min Jee Kim; Su Yeon Jeong; Sung Soo Kim; Iksoo Kim
Journal:  Curr Genet       Date:  2016-03-07       Impact factor: 3.886

3.  The complete mitochondrial genomes of two ghost moths, Thitarodes renzhiensis and Thitarodes yunnanensis: the ancestral gene arrangement in Lepidoptera.

Authors:  Yong-Qiang Cao; Chuan Ma; Ji-Yue Chen; Da-Rong Yang
Journal:  BMC Genomics       Date:  2012-06-22       Impact factor: 3.969

4.  MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa.

Authors:  Paolo D'Onorio de Meo; Mattia D'Antonio; Francesca Griggio; Renato Lupi; Massimiliano Borsani; Giulio Pavesi; Tiziana Castrignanò; Graziano Pesole; Carmela Gissi
Journal:  Nucleic Acids Res       Date:  2011-11-28       Impact factor: 16.971

5.  TaxMan: a taxonomic database manager.

Authors:  Martin Jones; Mark Blaxter
Journal:  BMC Bioinformatics       Date:  2006-12-18       Impact factor: 3.169

6.  Mitochondrial genomes of two Sinochlora species (Orthoptera): novel genome rearrangements and recognition sequence of replication origin.

Authors:  Chunxiang Liu; Jia Chang; Chuan Ma; Ling Li; Shanyi Zhou
Journal:  BMC Genomics       Date:  2013-02-20       Impact factor: 3.969

7.  Mitome: dynamic and interactive database for comparative mitochondrial genomics in metazoan animals.

Authors:  Yong Seok Lee; Jeongsu Oh; Young Uk Kim; Namchul Kim; Sungjin Yang; Ui Wook Hwang
Journal:  Nucleic Acids Res       Date:  2007-10-16       Impact factor: 16.971

8.  IMGD: an integrated platform supporting comparative genomics and phylogenetics of insect mitochondrial genomes.

Authors:  Wonhoon Lee; Jongsun Park; Jaeyoung Choi; Kyongyong Jung; Bongsoo Park; Donghan Kim; Jaeyoung Lee; Kyohun Ahn; Wonho Song; Seogchan Kang; Yong-Hwan Lee; Seunghwan Lee
Journal:  BMC Genomics       Date:  2009-04-07       Impact factor: 3.969

9.  Phylogenetic analysis of mitochondrial protein coding genes confirms the reciprocal paraphyly of Hexapoda and Crustacea.

Authors:  Antonio Carapelli; Pietro Liò; Francesco Nardi; Elizabeth van der Wath; Francesco Frati
Journal:  BMC Evol Biol       Date:  2007-08-16       Impact factor: 3.260

10.  Is it an ant or a butterfly? Convergent evolution in the mitochondrial gene order of Hymenoptera and Lepidoptera.

Authors:  Massimiliano Babbucci; Andrea Basso; Antonio Scupola; Tomaso Patarnello; Enrico Negrisolo
Journal:  Genome Biol Evol       Date:  2014-12-04       Impact factor: 3.416

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