Literature DB >> 16445955

SCORPION2: a database for structure-function analysis of scorpion toxins.

Paul T J Tan1, Anitha Veeramani, Kellathur N Srinivasan, Shoba Ranganathan, Vladimir Brusic.   

Abstract

Scorpion toxins are important experimental tools for characterization of vast array of ion channels and serve as scaffolds for drug design. General public database entries contain limited annotation whereby rich structure-function information from mutation studies is typically not available. SCORPION2 contains more than 800 records of native and mutant toxin sequences enriched with binding affinity and toxicity information, 624 three-dimensional structures and some 500 references. SCORPION2 has a set of search and prediction tools that allow users to extract and perform specific queries: text searches of scorpion toxin records, sequence similarity search, extraction of sequences, visualization of scorpion toxin structures, analysis of toxic activity, and functional annotation of previously uncharacterized scorpion toxins. The SCORPION2 database is available at http://sdmc.i2r.a-star.edu.sg/scorpion/.

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Year:  2006        PMID: 16445955     DOI: 10.1016/j.toxicon.2005.12.001

Source DB:  PubMed          Journal:  Toxicon        ISSN: 0041-0101            Impact factor:   3.033


  20 in total

1.  Evaluation of neuroprotective effects of insulin on immuno-inflammatory and systemic disorders induced by kaliotoxin, a Kv1.3 channel blocker.

Authors:  Zahida Taibi-Djennah; Marie-France Martin-Eauclaire; Fatima Laraba-Djebari
Journal:  Inflamm Res       Date:  2018-08-06       Impact factor: 4.575

2.  A predictor for toxin-like proteins exposes cell modulator candidates within viral genomes.

Authors:  Guy Naamati; Manor Askenazi; Michal Linial
Journal:  Bioinformatics       Date:  2010-09-15       Impact factor: 6.937

3.  ArachnoServer: a database of protein toxins from spiders.

Authors:  David L A Wood; Tomas Miljenović; Shuzhi Cai; Robert J Raven; Quentin Kaas; Pierre Escoubas; Volker Herzig; David Wilson; Glenn F King
Journal:  BMC Genomics       Date:  2009-08-13       Impact factor: 3.969

Review 4.  Scorpion venom components that affect ion-channels function.

Authors:  V Quintero-Hernández; J M Jiménez-Vargas; G B Gurrola; H H Valdivia; L D Possani
Journal:  Toxicon       Date:  2013-07-26       Impact factor: 3.033

Review 5.  Emerging options for the management of scorpion stings.

Authors:  Jean-Philippe Chippaux
Journal:  Drug Des Devel Ther       Date:  2012-07-05       Impact factor: 4.162

6.  Comparative venom gland transcriptome analysis of the scorpion Lychas mucronatus reveals intraspecific toxic gene diversity and new venomous components.

Authors:  Zhao Ruiming; Ma Yibao; He Yawen; Di Zhiyong; Wu Yingliang; Cao Zhijian; Li Wenxin
Journal:  BMC Genomics       Date:  2010-07-28       Impact factor: 3.969

7.  Animal Toxins: How is Complexity Represented in Databases?

Authors:  Florence Jungo; Anne Estreicher; Amos Bairoch; Lydie Bougueleret; Ioannis Xenarios
Journal:  Toxins (Basel)       Date:  2010-02-21       Impact factor: 4.546

8.  ClanTox: a classifier of short animal toxins.

Authors:  Guy Naamati; Manor Askenazi; Michal Linial
Journal:  Nucleic Acids Res       Date:  2009-05-08       Impact factor: 16.971

9.  Profiling the resting venom gland of the scorpion Tityus stigmurus through a transcriptomic survey.

Authors:  Diego D Almeida; Katia C Scortecci; Leonardo S Kobashi; Lucymara F Agnez-Lima; Silvia R B Medeiros; Arnóbio A Silva-Junior; Inácio de L M Junqueira-de-Azevedo; Matheus de F Fernandes-Pedrosa
Journal:  BMC Genomics       Date:  2012-08-01       Impact factor: 3.969

Review 10.  Scorpion toxins specific for potassium (K+) channels: a historical overview of peptide bioengineering.

Authors:  Zachary L Bergeron; Jon-Paul Bingham
Journal:  Toxins (Basel)       Date:  2012-11-01       Impact factor: 4.546

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