Literature DB >> 16445354

Protein turnover on the scale of the proteome.

Mary K Doherty1, Robert J Beynon.   

Abstract

Protein turnover is a neglected dimension in postgenomic studies, defining the dynamics of changes in protein expression and forging a link between transcriptome, proteome and metabolome. Recent advances in postgenomic technologies have led to the development of new proteomic techniques to measure protein turnover on a proteome-wide scale. These methods are driven by stable isotope metabolic labeling of cells in culture or in intact animals. This review considers the merits and difficulties of different methods that allow access to proteome dynamics.

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Year:  2006        PMID: 16445354     DOI: 10.1586/14789450.3.1.97

Source DB:  PubMed          Journal:  Expert Rev Proteomics        ISSN: 1478-9450            Impact factor:   3.940


  21 in total

Review 1.  Organellar proteomics: turning inventories into insights.

Authors:  Jens S Andersen; Matthias Mann
Journal:  EMBO Rep       Date:  2006-09       Impact factor: 8.807

2.  Rapid temporal dynamics of transcription, protein synthesis, and secretion during macrophage activation.

Authors:  Katrin Eichelbaum; Jeroen Krijgsveld
Journal:  Mol Cell Proteomics       Date:  2014-01-06       Impact factor: 5.911

3.  Degradation of protein translation machinery by amino acid starvation-induced macroautophagy.

Authors:  Christine Gretzmeier; Sven Eiselein; Gregory R Johnson; Rudolf Engelke; Heike Nowag; Mostafa Zarei; Victoria Küttner; Andrea C Becker; Kristoffer T G Rigbolt; Maria Høyer-Hansen; Jens S Andersen; Christian Münz; Robert F Murphy; Jörn Dengjel
Journal:  Autophagy       Date:  2017-04-28       Impact factor: 16.016

4.  Secretome Dynamics in a Gram-Positive Bacterial Model.

Authors:  Konstantinos C Tsolis; Mohamed Belal Hamed; Kenneth Simoens; Joachim Koepff; Tobias Busche; Christian Rückert; Marco Oldiges; Jörn Kalinowski; Jozef Anné; Jan Kormanec; Kristel Bernaerts; Spyridoula Karamanou; Anastassios Economou
Journal:  Mol Cell Proteomics       Date:  2018-11-29       Impact factor: 5.911

Review 5.  Proteome dynamics: revisiting turnover with a global perspective.

Authors:  Amy J Claydon; Robert Beynon
Journal:  Mol Cell Proteomics       Date:  2012-11-02       Impact factor: 5.911

6.  Protein kinetic signatures of the remodeling heart following isoproterenol stimulation.

Authors:  Maggie P Y Lam; Ding Wang; Edward Lau; David A Liem; Allen K Kim; Dominic C M Ng; Xiangbo Liang; Brian J Bleakley; Chenguang Liu; Jason D Tabaraki; Martin Cadeiras; Yibin Wang; Mario C Deng; Peipei Ping
Journal:  J Clin Invest       Date:  2014-03-10       Impact factor: 14.808

Review 7.  Exploring ribosome composition and newly synthesized proteins through proteomics and potential biomedical applications.

Authors:  Miroslava Stastna; Roberta A Gottlieb; Jennifer E Van Eyk
Journal:  Expert Rev Proteomics       Date:  2017-05-26       Impact factor: 3.940

8.  Protein turnover during in vitro tissue engineering.

Authors:  Qiyao Li; Zhen Chang; Gisele Oliveira; Maiyer Xiong; Lloyd M Smith; Brian L Frey; Nathan V Welham
Journal:  Biomaterials       Date:  2015-12-14       Impact factor: 12.479

9.  Identification of syntrophic acetate-oxidizing bacteria in anaerobic digesters by combined protein-based stable isotope probing and metagenomics.

Authors:  Freya Mosbæk; Henrik Kjeldal; Daniel G Mulat; Mads Albertsen; Alastair J Ward; Anders Feilberg; Jeppe L Nielsen
Journal:  ISME J       Date:  2016-04-29       Impact factor: 10.302

10.  Proteome Scale-Protein Turnover Analysis Using High Resolution Mass Spectrometric Data from Stable-Isotope Labeled Plants.

Authors:  Kai-Ting Fan; Aaron K Rendahl; Wen-Ping Chen; Dana M Freund; William M Gray; Jerry D Cohen; Adrian D Hegeman
Journal:  J Proteome Res       Date:  2016-01-29       Impact factor: 4.466

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