Literature DB >> 16445344

The Proteomics Identifications Database (PRIDE) and the ProteomExchange Consortium: making proteomics data accessible.

Henning Hermjakob, Rolf Apweiler.   

Abstract

Mesh:

Year:  2006        PMID: 16445344     DOI: 10.1586/14789450.3.1.1

Source DB:  PubMed          Journal:  Expert Rev Proteomics        ISSN: 1478-9450            Impact factor:   3.940


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  26 in total

1.  Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles).

Authors:  Christopher R Kinsinger; James Apffel; Mark Baker; Xiaopeng Bian; Christoph H Borchers; Ralph Bradshaw; Mi-Youn Brusniak; Daniel W Chan; Eric W Deutsch; Bruno Domon; Jeff Gorman; Rudolf Grimm; William Hancock; Henning Hermjakob; David Horn; Christie Hunter; Patrik Kolar; Hans-Joachim Kraus; Hanno Langen; Rune Linding; Robert L Moritz; Gilbert S Omenn; Ron Orlando; Akhilesh Pandey; Peipei Ping; Amir Rahbar; Robert Rivers; Sean L Seymour; Richard J Simpson; Douglas Slotta; Richard D Smith; Stephen E Stein; David L Tabb; Danilo Tagle; John R Yates; Henry Rodriguez
Journal:  Mol Cell Proteomics       Date:  2011-11-03       Impact factor: 5.911

Review 2.  Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions.

Authors:  Paola Picotti; Ruedi Aebersold
Journal:  Nat Methods       Date:  2012-05-30       Impact factor: 28.547

Review 3.  Protein Bioinformatics Databases and Resources.

Authors:  Chuming Chen; Hongzhan Huang; Cathy H Wu
Journal:  Methods Mol Biol       Date:  2017

4.  Progress in mining the human proteome for disease applications.

Authors:  Sam Hanash
Journal:  OMICS       Date:  2011-03

5.  Phosphoproteins in extracellular vesicles as candidate markers for breast cancer.

Authors:  I-Hsuan Chen; Liang Xue; Chuan-Chih Hsu; Juan Sebastian Paez Paez; Li Pan; Hillary Andaluz; Michael K Wendt; Anton B Iliuk; Jian-Kang Zhu; W Andy Tao
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-07       Impact factor: 11.205

Review 6.  Proteomics data repositories: providing a safe haven for your data and acting as a springboard for further research.

Authors:  Juan Antonio Vizcaíno; Joseph M Foster; Lennart Martens
Journal:  J Proteomics       Date:  2010-07-06       Impact factor: 4.044

7.  A guide to the Proteomics Identifications Database proteomics data repository.

Authors:  Juan Antonio Vizcaíno; Richard Côté; Florian Reisinger; Joseph M Foster; Michael Mueller; Jonathan Rameseder; Henning Hermjakob; Lennart Martens
Journal:  Proteomics       Date:  2009-09       Impact factor: 3.984

8.  MAPU 2.0: high-accuracy proteomes mapped to genomes.

Authors:  Florian Gnad; Mario Oroshi; Ewan Birney; Matthias Mann
Journal:  Nucleic Acids Res       Date:  2008-10-23       Impact factor: 16.971

9.  The European Bioinformatics Institute's data resources.

Authors:  Catherine Brooksbank; Graham Cameron; Janet Thornton
Journal:  Nucleic Acids Res       Date:  2009-11-24       Impact factor: 16.971

10.  The Proteomics Identifications database: 2010 update.

Authors:  Juan Antonio Vizcaíno; Richard Côté; Florian Reisinger; Harald Barsnes; Joseph M Foster; Jonathan Rameseder; Henning Hermjakob; Lennart Martens
Journal:  Nucleic Acids Res       Date:  2009-11-11       Impact factor: 16.971

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