Literature DB >> 16441349

A step by step guide to phylogeny reconstruction.

C Jill Harrison1, Jane A Langdale.   

Abstract

The aim of this paper is to enable those who have never reconstructed a phylogeny to do so from scratch. The paper does not attempt to be a comprehensive theoretical guide, but describes one rigorous way of obtaining phylogenetic trees. Those who follow the methods outlined should be able to understand the basic ideas behind the steps taken, the meaning of the phylogenetic trees obtained and the scope of questions that can be answered with phylogenetic methods. The protocols have been successfully tested by volunteers with no phylogenetic experience.

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Year:  2006        PMID: 16441349     DOI: 10.1111/j.1365-313X.2005.02611.x

Source DB:  PubMed          Journal:  Plant J        ISSN: 0960-7412            Impact factor:   6.417


  24 in total

1.  Isolation and functional characterization of a floral tissue-specific R2R3 MYB regulator from tobacco.

Authors:  Sitakanta Pattanaik; Que Kong; David Zaitlin; Joshua R Werkman; Claire H Xie; Barunava Patra; Ling Yuan
Journal:  Planta       Date:  2010-02-16       Impact factor: 4.116

2.  A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members.

Authors:  Adamantia Agalou; Sigit Purwantomo; Elin Overnäs; Henrik Johannesson; Xiaoyi Zhu; Amy Estiati; Rolf J de Kam; Peter Engström; Inez H Slamet-Loedin; Zhen Zhu; Mei Wang; Lizhong Xiong; Annemarie H Meijer; Pieter B F Ouwerkerk
Journal:  Plant Mol Biol       Date:  2007-11-13       Impact factor: 4.076

3.  A genomics approach to deciphering lignin biosynthesis in switchgrass.

Authors:  Hui Shen; Mitra Mazarei; Hiroshi Hisano; Luis Escamilla-Trevino; Chunxiang Fu; Yunqiao Pu; Mary R Rudis; Yuhong Tang; Xirong Xiao; Lisa Jackson; Guifen Li; Tim Hernandez; Fang Chen; Arthur J Ragauskas; C Neal Stewart; Zeng-Yu Wang; Richard A Dixon
Journal:  Plant Cell       Date:  2013-11-27       Impact factor: 11.277

4.  Arabidopsis deadenylases AtCAF1a and AtCAF1b play overlapping and distinct roles in mediating environmental stress responses.

Authors:  Justin W Walley; Dior R Kelley; Gergana Nestorova; David L Hirschberg; Katayoon Dehesh
Journal:  Plant Physiol       Date:  2009-12-02       Impact factor: 8.340

5.  Signal processing for metagenomics: extracting information from the soup.

Authors:  Gail L Rosen; Bahrad A Sokhansanj; Robi Polikar; Mary Ann Bruns; Jacob Russell; Elaine Garbarine; Steve Essinger; Non Yok
Journal:  Curr Genomics       Date:  2009-11       Impact factor: 2.236

6.  Carbohydrate metabolism in the Toxoplasma gondii apicoplast: localization of three glycolytic isoenzymes, the single pyruvate dehydrogenase complex, and a plastid phosphate translocator.

Authors:  Tobias Fleige; Karsten Fischer; David J P Ferguson; Uwe Gross; Wolfgang Bohne
Journal:  Eukaryot Cell       Date:  2007-04-20

7.  Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.

Authors:  Suzanne J H Kuijt; Raffaella Greco; Adamantia Agalou; Jingxia Shao; Corine C J 't Hoen; Elin Overnäs; Michela Osnato; Serena Curiale; Donaldo Meynard; Robert van Gulik; Simone de Faria Maraschin; Mirna Atallah; Rolf J de Kam; Gerda E M Lamers; Emmanuel Guiderdoni; Laura Rossini; Annemarie H Meijer; Pieter B F Ouwerkerk
Journal:  Plant Physiol       Date:  2014-02-14       Impact factor: 8.340

8.  Bacterial phylogenetic tree construction based on genomic translation stop signals.

Authors:  Lijing Xu; Jimmy Kuo; Jong-Kang Liu; Tit-Yee Wong
Journal:  Microb Inform Exp       Date:  2012-05-31

9.  Fungal trunk pathogens associated with wood decay of almond trees on Mallorca (Spain).

Authors:  D Gramaje; C Agustí-Brisach; A Pérez-Sierra; E Moralejo; D Olmo; L Mostert; U Damm; J Armengol
Journal:  Persoonia       Date:  2012-01-16       Impact factor: 11.051

10.  Insight into early diversification of leucine-rich repeat receptor-like kinases provided by the sequenced moss and hornwort genomes.

Authors:  Chihiro Furumizu; Shinichiro Sawa
Journal:  Plant Mol Biol       Date:  2021-01-03       Impact factor: 4.076

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