Literature DB >> 16438607

Polymer translocation through a nanopore: a two-dimensional Monte Carlo study.

Kaifu Luo1, T Ala-Nissila, See-Chen Ying.   

Abstract

We investigate the problem of polymer translocation through a nanopore in the absence of an external driving force. To this end, we use the two-dimensional fluctuating bond model with single-segment Monte Carlo moves. To overcome the entropic barrier without artificial restrictions, we consider a polymer which is initially placed in the middle of the pore and study the escape time tau required for the polymer to completely exit the pore on either end. We find numerically that tau scales with the chain length N as tau approximately N(1+2nu), where nu is the Flory exponent. This is the same scaling as predicted for the translocation time of a polymer which passes through the nanopore in one direction only. We examine the interplay between the pore length L and the radius of gyration R(g). For L<<R(g), we numerically verify that asymptotically tau approximately N(1+2nu). For L>>R(g), we find tau approximately N. In addition, we numerically find the scaling function describing crossover between short and long pores. We also show that tau has a minimum as a function of L for longer chains when the radius of gyration along the pore direction R( parallel) approximately L. Finally, we demonstrate that the stiffness of the polymer does not change the scaling behavior of translocation dynamics for single-segment dynamics.

Entities:  

Year:  2006        PMID: 16438607     DOI: 10.1063/1.2161189

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  6 in total

1.  Molecular Dynamics simulation of a polymer chain translocating through a nanoscopic pore: hydrodynamic interactions versus pore radius.

Authors:  M G Gauthier; G W Slater
Journal:  Eur Phys J E Soft Matter       Date:  2008-01-31       Impact factor: 1.890

2.  Scaling exponents of forced polymer translocation through a nanopore.

Authors:  A Bhattacharya; W H Morrison; K Luo; T Ala-Nissila; S-C Ying; A Milchev; K Binder
Journal:  Eur Phys J E Soft Matter       Date:  2009-08-08       Impact factor: 1.890

3.  Molecular Dynamics Simulation of a Single Carbon Chain through an Asymmetric Double-Layer Graphene Nanopore for Prolonging the Translocation Time.

Authors:  Yaohong Zhou; Haidong Wang
Journal:  ACS Omega       Date:  2022-05-06

4.  Polymer translocation in a double-force arrangement.

Authors:  S T T Ollila; K F Luo; T Ala-Nissila; S-C Ying
Journal:  Eur Phys J E Soft Matter       Date:  2009-03-27       Impact factor: 1.890

5.  Polymer translocation through a cylindrical channel.

Authors:  Chiu Tai Andrew Wong; M Muthukumar
Journal:  J Chem Phys       Date:  2008-04-21       Impact factor: 3.488

6.  Translocation of a Polymer through a Crowded Channel under Electrical Force.

Authors:  Tingting Sun; Yunxin Gen; Hujun Xie; Zhouting Jiang; Zhiyong Yang
Journal:  Biomed Res Int       Date:  2017-03-26       Impact factor: 3.411

  6 in total

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