Literature DB >> 16432879

Two distinct heme distal site states define Cerebratulus lacteus mini-hemoglobin oxygen affinity.

Marcelo A Martí1, Damían E Bikiel, Alejandro Crespo, Marco Nardini, Martino Bolognesi, Dario A Estrin.   

Abstract

The nerve tissue hemoglobin of Cerebratulus lacteus (CerHb) is the smallest naturally occurring known hemoglobin. Stabilization of the diatomic bound species (e.g., O(2)) is achieved through a network of hydrogen bonds based on three key residues TyrB10, GlnE7, and ThrE11. The first two residues are typically associated in hemoglobins with enhanced O(2) affinity, related to hydrogen bond stabilization of the heme-bound O(2) resulting in a decrease of the ligand dissociation rates. In contrast to the above observations, the affinity of CerHb for O(2) is only moderate, and the rate of O(2) dissociation is unexpectedly high. To gain insight on the diverse molecular mechanisms controlling ligand affinities, we have analyzed w.t. CerHb and its ThrE11-->Val mutant by means of joint molecular dynamics and quantum mechanics simulation techniques, complementing recent site-directed mutagenesis experiments. Our results suggest that the observed O(2) dissociation rates can only be explained through a dynamic equilibrium between high and low affinity states of the w.t. CerHb heme distal site. (c) 2005 Wiley-Liss, Inc.

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Year:  2006        PMID: 16432879     DOI: 10.1002/prot.20822

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  6 in total

1.  Ligand migration in the apolar tunnel of Cerebratulus lacteus mini-hemoglobin.

Authors:  Alessandra Pesce; Marco Nardini; Sylvia Dewilde; Luciana Capece; Marcelo A Martí; Sonia Congia; Mallory D Salter; George C Blouin; Darío A Estrin; Paolo Ascenzi; Luc Moens; Martino Bolognesi; John S Olson
Journal:  J Biol Chem       Date:  2010-12-07       Impact factor: 5.157

2.  Transient ligand docking sites in Cerebratulus lacteus mini-hemoglobin.

Authors:  Pengchi Deng; Karin Nienhaus; Pasquale Palladino; John S Olson; George Blouin; Luc Moens; Sylvia Dewilde; Eva Geuens; G Ulrich Nienhaus
Journal:  Gene       Date:  2007-04-29       Impact factor: 3.688

3.  The first step of the dioxygenation reaction carried out by tryptophan dioxygenase and indoleamine 2,3-dioxygenase as revealed by quantum mechanical/molecular mechanical studies.

Authors:  Luciana Capece; Ariel Lewis-Ballester; Dipanwita Batabyal; Natali Di Russo; Syun-Ru Yeh; Dario A Estrin; Marcelo A Marti
Journal:  J Biol Inorg Chem       Date:  2010-04-02       Impact factor: 3.358

4.  Role of the distal hydrogen-bonding network in regulating oxygen affinity in the truncated hemoglobin III from Campylobacter jejuni.

Authors:  Pau Arroyo Mañez; Changyuan Lu; Leonardo Boechi; Marcelo A Martí; Mark Shepherd; Jayne Louise Wilson; Robert K Poole; F Javier Luque; Syun-Ru Yeh; Darío A Estrin
Journal:  Biochemistry       Date:  2011-04-25       Impact factor: 3.162

5.  Substrate stereo-specificity in tryptophan dioxygenase and indoleamine 2,3-dioxygenase.

Authors:  Luciana Capece; Mehrnoosh Arrar; Adrian E Roitberg; Syun-Ru Yeh; Marcelo A Marti; Dario A Estrin
Journal:  Proteins       Date:  2010-11-01

6.  High resolution crystal structures of the Cerebratulus lacteus mini-Hb in the unligated and carbomonoxy states.

Authors:  Francesca Germani; Alessandra Pesce; Andrea Venturini; Luc Moens; Martino Bolognesi; Sylvia Dewilde; Marco Nardini
Journal:  Int J Mol Sci       Date:  2012-06-28       Impact factor: 6.208

  6 in total

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