Literature DB >> 16431039

Human and orthologous gene nomenclature.

Mathew W Wright1, Elspeth A Bruford.   

Abstract

Standardised human gene nomenclature is an essential tool for all researchers, and applying this nomenclature to orthologous genes in other species greatly extends its utility. As more genomes are sequenced and annotated the wealth of information in the public domain concerning homologous genes and their products increases greatly. Here we review many of the resources currently available for identifying orthologs and paralogs, and viewing regions of synteny between genomes, and discuss how these can and are being used in the process of nomenclature assignment. Whilst synchronised gene naming has been actively pursued between human and mouse for many years, and continues apace, it is hoped that this nomenclature will eventually be extended to many other comparative genomes.

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Year:  2006        PMID: 16431039     DOI: 10.1016/j.gene.2005.10.029

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  10 in total

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Journal:  Curr Protoc Toxicol       Date:  2009

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Authors:  Zuzana Drobna; Miroslav Styblo; David J Thomas
Journal:  Curr Protoc Toxicol       Date:  2009-11

3.  A nomenclature for echinoderm genes.

Authors:  Thomas R Beatman; Katherine M Buckley; Gregory A Cary; Veronica F Hinman; Charles A Ettensohn
Journal:  Database (Oxford)       Date:  2021-08-07       Impact factor: 4.462

4.  Gene and transgenics nomenclature for the laboratory axolotl-Ambystoma mexicanum.

Authors:  Sergej Nowoshilow; Ji-Feng Fei; S Randal Voss; Elly M Tanaka; Prayag Murawala
Journal:  Dev Dyn       Date:  2021-05-03       Impact factor: 2.842

5.  Multi-task learning for the simultaneous reconstruction of the human and mouse gene regulatory networks.

Authors:  Paolo Mignone; Gianvito Pio; Sašo Džeroski; Michelangelo Ceci
Journal:  Sci Rep       Date:  2020-12-18       Impact factor: 4.379

6.  Survey-based naming conventions for use in OBO Foundry ontology development.

Authors:  Daniel Schober; Barry Smith; Suzanna E Lewis; Waclaw Kusnierczyk; Jane Lomax; Chris Mungall; Chris F Taylor; Philippe Rocca-Serra; Susanna-Assunta Sansone
Journal:  BMC Bioinformatics       Date:  2009-04-27       Impact factor: 3.169

7.  A genome-wide characterization of microRNA genes in maize.

Authors:  Lifang Zhang; Jer-Ming Chia; Sunita Kumari; Joshua C Stein; Zhijie Liu; Apurva Narechania; Christopher A Maher; Katherine Guill; Michael D McMullen; Doreen Ware
Journal:  PLoS Genet       Date:  2009-11-20       Impact factor: 5.917

8.  RGST - Rat Gene Symbol Tracker, a database for defining official rat gene symbols.

Authors:  Greta Petersen; Fredrik Ståhl
Journal:  BMC Genomics       Date:  2008-01-23       Impact factor: 3.969

9.  Experimental-confirmation and functional-annotation of predicted proteins in the chicken genome.

Authors:  Teresia J Buza; Fiona M McCarthy; Shane C Burgess
Journal:  BMC Genomics       Date:  2007-11-19       Impact factor: 3.969

10.  Genome-Wide Identification of Calcium Dependent Protein Kinase Gene Family in Plant Lineage Shows Presence of Novel D-x-D and D-E-L Motifs in EF-Hand Domain.

Authors:  Tapan K Mohanta; Nibedita Mohanta; Yugal K Mohanta; Hanhong Bae
Journal:  Front Plant Sci       Date:  2015-12-24       Impact factor: 5.753

  10 in total

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