Literature DB >> 16429155

RNA recognition by the Vts1p SAM domain.

Philip E Johnson1, Logan W Donaldson.   

Abstract

The putative yeast post-transcriptional regulator Vts1p and its related protein Smaug, from Drosophila melanogaster, each use a sterile alpha motif (SAM) domain to bind an RNA hairpin termed the Smaug recognition element (SRE). Here, we present the NMR structures of the Vts1p-SRE complex and the free SRE. Structural highlights include the direct recognition of a guanine base and the formation or stabilization of a base pair in the SRE loop.

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Year:  2006        PMID: 16429155     DOI: 10.1038/nsmb1039

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  27 in total

1.  From cis-regulatory elements to complex RNPs and back.

Authors:  Fátima Gebauer; Thomas Preiss; Matthias W Hentze
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4.  Bicaudal C is required for the function of the follicular epithelium during oogenesis in Rhodnius prolixus.

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5.  The bicoid mRNA localization factor Exuperantia is an RNA-binding pseudonuclease.

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6.  Structural insights into SAM domain-mediated tankyrase oligomerization.

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7.  Multiple upstream signals converge on the adaptor protein Mst50 in Magnaporthe grisea.

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8.  CNK and HYP form a discrete dimer by their SAM domains to mediate RAF kinase signaling.

Authors:  Thanashan Rajakulendran; Malha Sahmi; Igor Kurinov; Mike Tyers; Marc Therrien; Frank Sicheri
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-19       Impact factor: 11.205

9.  AptaTRACE Elucidates RNA Sequence-Structure Motifs from Selection Trends in HT-SELEX Experiments.

Authors:  Phuong Dao; Jan Hoinka; Mayumi Takahashi; Jiehua Zhou; Michelle Ho; Yijie Wang; Fabrizio Costa; John J Rossi; Rolf Backofen; John Burnett; Teresa M Przytycka
Journal:  Cell Syst       Date:  2016-07       Impact factor: 10.304

10.  Involvement of Vts1, a structure-specific RNA-binding protein, in Okazaki fragment processing in yeast.

Authors:  Chul-Hwan Lee; Yong-Keol Shin; Thi Thu Huong Phung; Jae Seok Bae; Young-Hoon Kang; Tuan Anh Nguyen; Jeong-Hoon Kim; Do-Hyung Kim; Min-Jung Kang; Sung-Ho Bae; Yeon-Soo Seo
Journal:  Nucleic Acids Res       Date:  2009-12-09       Impact factor: 16.971

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