Literature DB >> 16428425

Comparative genomic analysis of 18 Pseudomonas aeruginosa bacteriophages.

Tony Kwan1, Jing Liu, Michael Dubow, Philippe Gros, Jerry Pelletier.   

Abstract

A genomic analysis of 18 P. aeruginosa phages, including nine newly sequenced DNA genomes, indicates a tremendous reservoir of proteome diversity, with 55% of open reading frames (ORFs) being novel. Comparative sequence analysis and ORF map organization revealed that most of the phages analyzed displayed little relationship to each other.

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Year:  2006        PMID： 16428425      PMCID： PMC1347338          DOI： 10.1128/JB.188.3.1184-1187.2006

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  Origins of highly mosaic mycobacteriophage genomes.

Authors:  Marisa L Pedulla; Michael E Ford; Jennifer M Houtz; Tharun Karthikeyan; Curtis Wadsworth; John A Lewis; Debbie Jacobs-Sera; Jacob Falbo; Joseph Gross; Nicholas R Pannunzio; William Brucker; Vanaja Kumar; Jayasankar Kandasamy; Lauren Keenan; Svetsoslav Bardarov; Jordan Kriakov; Jeffrey G Lawrence; William R Jacobs; Roger W Hendrix; Graham F Hatfull
Journal:  Cell       Date:  2003-04-18       Impact factor: 41.582

2.  Sequence of the genome of the temperate, serotype-converting, Pseudomonas aeruginosa bacteriophage D3.

Authors:  A M Kropinski
Journal:  J Bacteriol       Date:  2000-11       Impact factor: 3.490

3.  The genome of the Pseudomonas aeruginosa generalized transducing bacteriophage F116.

Authors:  Michaela Byrne; Andrew M Kropinski
Journal:  Gene       Date:  2005-01-28       Impact factor: 3.688

4.  Identification of consensus patterns in unaligned DNA sequences known to be functionally related.

Authors:  G Z Hertz; G W Hartzell; G D Stormo
Journal:  Comput Appl Biosci       Date:  1990-04

5.  The genome of bacteriophage phiKZ of Pseudomonas aeruginosa.

Authors:  Vadim V Mesyanzhinov; Johan Robben; Barbara Grymonprez; Victor A Kostyuchenko; Maria V Bourkaltseva; Nina N Sykilinda; Victor N Krylov; Guido Volckaert
Journal:  J Mol Biol       Date:  2002-03-15       Impact factor: 5.469

6.  Identifying protein-binding sites from unaligned DNA fragments.

Authors:  G D Stormo; G W Hartzell
Journal:  Proc Natl Acad Sci U S A       Date:  1989-02       Impact factor: 11.205

7.  A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis.

Authors:  E L Sonnhammer; R Durbin
Journal:  Gene       Date:  1995-12-29       Impact factor: 3.688

8.  The complete nucleotide sequence of phi CTX, a cytotoxin-converting phage of Pseudomonas aeruginosa: implications for phage evolution and horizontal gene transfer via bacteriophages.

Authors:  K Nakayama; S Kanaya; M Ohnishi; Y Terawaki; T Hayashi
Journal:  Mol Microbiol       Date:  1999-01       Impact factor: 3.501

9.  The genome of bacteriophage phiKMV, a T7-like virus infecting Pseudomonas aeruginosa.

Authors:  Rob Lavigne; Maria V Burkal'tseva; Johan Robben; Nina N Sykilinda; Lidia P Kurochkina; Barbara Grymonprez; Bart Jonckx; Victor N Krylov; Vadim V Mesyanzhinov; Guido Volckaert
Journal:  Virology       Date:  2003-07-20       Impact factor: 3.616

10.  Complete sequence and evolutionary genomic analysis of the Pseudomonas aeruginosa transposable bacteriophage D3112.

Authors:  Pauline W Wang; Linda Chu; David S Guttman
Journal:  J Bacteriol       Date:  2004-01       Impact factor: 3.490
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  73 in total

1.  BVPaP-3, a T7-like lytic phage of Pseudomonas aeruginosa: its isolation and characterisation.

Authors:  Sangeeta Ahiwale; Divya Prakash; Milind Gajbhiye; Smita Jagdale; Nita Patil; Balu Kapadnis
Journal:  Curr Microbiol       Date:  2012-01-04       Impact factor: 2.188

2.  Complete genomic sequence and mass spectrometric analysis of highly diverse, atypical Bacillus thuringiensis phage 0305phi8-36.

Authors:  Julie A Thomas; Stephen C Hardies; Mandy Rolando; Shirley J Hayes; Karen Lieman; Christopher A Carroll; Susan T Weintraub; Philip Serwer
Journal:  Virology       Date:  2007-07-30       Impact factor: 3.616

3.  Genomic characterization of mycobacteriophage Giles: evidence for phage acquisition of host DNA by illegitimate recombination.

Authors:  Peter Morris; Laura J Marinelli; Deborah Jacobs-Sera; Roger W Hendrix; Graham F Hatfull
Journal:  J Bacteriol       Date:  2008-01-04       Impact factor: 3.490

Review 4.  Comparative genomics of the mycobacteriophages: insights into bacteriophage evolution.

Authors:  Graham F Hatfull; Steven G Cresawn; Roger W Hendrix
Journal:  Res Microbiol       Date:  2008-05-07       Impact factor: 3.992

5.  Sequence and structural characterization of great salt lake bacteriophage CW02, a member of the T7-like supergroup.

Authors:  Peter S Shen; Matthew J Domek; Eduardo Sanz-García; Aman Makaju; Ryan M Taylor; Ryan Hoggan; Michele D Culumber; Craig J Oberg; Donald P Breakwell; John T Prince; David M Belnap
Journal:  J Virol       Date:  2012-05-16       Impact factor: 5.103

Review 6.  Diversity among the tailed-bacteriophages that infect the Enterobacteriaceae.

Authors:  Sherwood R Casjens
Journal:  Res Microbiol       Date:  2008-04-30       Impact factor: 3.992

7.  Pseudomonas aeruginosa phage PaP1 DNA polymerase is an A-family DNA polymerase demonstrating ssDNA and dsDNA 3'-5' exonuclease activity.

Authors:  Binyan Liu; Shiling Gu; Nengsong Liang; Mei Xiong; Qizhen Xue; Shuguang Lu; Fuquan Hu; Huidong Zhang
Journal:  Virus Genes       Date:  2016-04-06       Impact factor: 2.332

8.  Development of phoH as a novel signature gene for assessing marine phage diversity.

Authors:  Dawn B Goldsmith; Giuseppe Crosti; Bhakti Dwivedi; Lauren D McDaniel; Arvind Varsani; Curtis A Suttle; Markus G Weinbauer; Ruth-Anne Sandaa; Mya Breitbart
Journal:  Appl Environ Microbiol       Date:  2011-09-16       Impact factor: 4.792

9.  Genetic characterization indicates that a specific subpopulation of Pseudomonas aeruginosa is associated with keratitis infections.

Authors:  Rosalind M K Stewart; Lutz Wiehlmann; Kevin E Ashelford; Stephanie J Preston; Eliane Frimmersdorf; Barry J Campbell; Timothy J Neal; Neil Hall; Stephen Tuft; Stephen B Kaye; Craig Winstanley
Journal:  J Clin Microbiol       Date:  2011-01-12       Impact factor: 5.948

Review 10.  Bacteriophage genomics.

Authors:  Graham F Hatfull
Journal:  Curr Opin Microbiol       Date:  2008-10-14       Impact factor: 7.934
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