Literature DB >> 16427712

Detection of Mycobacterium tuberculosis complex with Real Time PCR: comparison of different primer-probe sets based on the IS6110 element.

Paul H M Savelkoul1, Arnold Catsburg, Sije Mulder, Ludo Oostendorp, Jurjen Schirm, Hans Wilke, Adri G M van der Zanden, Gerda T Noordhoek.   

Abstract

The sensitivity and specificity to detect Mycobacterium tuberculosis complex of four Real Time PCR primer-probe sets was compared. Three sets targeted nearly the same location on the IS6110 sequence and set 4 targeted a location 200 bp downstream on IS6110. Real Time PCR's with sets 1, 2 and 3 were carried out with co-amplification of a modified target as an internal amplification control. By testing identical DNA samples it was shown that small changes in primer and probe sequences result in differences in the performance of the assays, regarding analytical sensitivity and specificity.

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Year:  2006        PMID: 16427712     DOI: 10.1016/j.mimet.2005.12.003

Source DB:  PubMed          Journal:  J Microbiol Methods        ISSN: 0167-7012            Impact factor:   2.363


  26 in total

1.  Screening ancient tuberculosis with qPCR: challenges and opportunities.

Authors:  Kelly M Harkins; Jane E Buikstra; Tessa Campbell; Kirsten I Bos; Eric D Johnson; Johannes Krause; Anne C Stone
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-01-19       Impact factor: 6.237

2.  A bench-top automated workstation for nucleic acid isolation from clinical sample types.

Authors:  Nitu Thakore; Steve Garber; Arial Bueno; Peter Qu; Ryan Norville; Michael Villanueva; Darrell P Chandler; Rebecca Holmberg; Christopher G Cooney
Journal:  J Microbiol Methods       Date:  2018-04-18       Impact factor: 2.363

Review 3.  An appraisal of PCR-based technology in the detection of Mycobacterium tuberculosis.

Authors:  Sathish Sankar; Mageshbabu Ramamurthy; Balaji Nandagopal; Gopalan Sridharan
Journal:  Mol Diagn Ther       Date:  2011-02-01       Impact factor: 4.074

4.  Bronchoalveolar lavage enzyme-linked immunospot for a rapid diagnosis of tuberculosis: a Tuberculosis Network European Trialsgroup study.

Authors:  Claudia Jafari; Steven Thijsen; Giovanni Sotgiu; Delia Goletti; José Antonio Domínguez Benítez; Monica Losi; Ralf Eberhardt; Detlef Kirsten; Barbara Kalsdorf; Aik Bossink; Irene Latorre; Giovanni B Migliori; Alan Strassburg; Susanne Winteroll; Ulf Greinert; Luca Richeldi; Martin Ernst; Christoph Lange
Journal:  Am J Respir Crit Care Med       Date:  2009-07-09       Impact factor: 21.405

5.  Two cases of Mycobacterium microti-induced culture-negative tuberculosis.

Authors:  Eefje de Jong; Rob J Rentenaar; Rob van Pelt; Wiel de Lange; Wim Schreurs; Dick van Soolingen; Patrick D J Sturm
Journal:  J Clin Microbiol       Date:  2009-07-01       Impact factor: 5.948

6.  Comparison of 14 molecular assays for detection of Mycobacterium tuberculosis complex in bronchoalveolar lavage fluid.

Authors:  Onno W Akkerman; Tjip S van der Werf; Maria de Boer; Jessica L de Beer; Zeaur Rahim; John W A Rossen; Dick van Soolingen; Huib A M Kerstjens; Adri G M van der Zanden
Journal:  J Clin Microbiol       Date:  2013-08-21       Impact factor: 5.948

7.  Combined real-time PCR and rpoB gene pyrosequencing for rapid identification of Mycobacterium tuberculosis and determination of rifampin resistance directly in clinical specimens.

Authors:  Tanya A Halse; Justine Edwards; Phyllis L Cunningham; William J Wolfgang; Nellie B Dumas; Vincent E Escuyer; Kimberlee A Musser
Journal:  J Clin Microbiol       Date:  2010-01-27       Impact factor: 5.948

8.  Detection of Mycobacterium tuberculosis Complex Bacilli and Nucleic Acids From Tongue Swabs in Young, Hospitalized Children.

Authors:  Christopher Ealand; Julian Peters; Olivia Jacobs; Astika Sewcharran; Azra Ghoor; Jonathan Golub; Heena Brahmbhatt; Neil Martinson; Ziyaad Dangor; Sanjay G Lala; Bavesh Kana
Journal:  Front Cell Infect Microbiol       Date:  2021-06-14       Impact factor: 5.293

9.  Comparison of real time IS6110-PCR, microscopy, and culture for diagnosis of tuberculous meningitis in a cohort of adult patients in Indonesia.

Authors:  Lidya Chaidir; Ahmad Rizal Ganiem; Adri Vander Zanden; Soni Muhsinin; Tina Kusumaningrum; Inri Kusumadewi; Andre van der Ven; Bachti Alisjahbana; Ida Parwati; Reinout van Crevel
Journal:  PLoS One       Date:  2012-12-21       Impact factor: 3.240

10.  Cerebral toxoplasmosis mimicking subacute meningitis in HIV-infected patients; a cohort study from Indonesia.

Authors:  A Rizal Ganiem; Sofiati Dian; Agnes Indriati; Lidya Chaidir; Rudi Wisaksana; Patrick Sturm; Willem Melchers; Andre van der Ven; Ida Parwati; Reinout van Crevel
Journal:  PLoS Negl Trop Dis       Date:  2013-01-10
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