Literature DB >> 16423925

SUSPECTS: enabling fast and effective prioritization of positional candidates.

E A Adie1, R R Adams, K L Evans, D J Porteous, B S Pickard.   

Abstract

UNLABELLED: SUSPECTS is a web-based server which combines annotation and sequence-based approaches to prioritize disease candidate genes in large regions of interest. It uses multiple lines of evidence to rank genes quickly and effectively while limiting the effect of annotation bias to significantly improve performance. AVAILABILITY: SUSPECTS is freely available at http://www.genetics.med.ed.ac.uk/suspects/ SUPPLEMENTARY INFORMATION: A quick-start guide in Macromedia Flash format is available at http://www.genetics.med.ed.ac.uk/suspects/help.shtml and Excel spreadsheets detailing the comparative performance of the software are included as Supplementary material.

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Year:  2006        PMID: 16423925     DOI: 10.1093/bioinformatics/btk031

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  97 in total

Review 1.  Bioinformatics for personal genome interpretation.

Authors:  Emidio Capriotti; Nathan L Nehrt; Maricel G Kann; Yana Bromberg
Journal:  Brief Bioinform       Date:  2012-01-13       Impact factor: 11.622

2.  Outcome of array CGH analysis for 255 subjects with intellectual disability and search for candidate genes using bioinformatics.

Authors:  Y Qiao; C Harvard; C Tyson; X Liu; C Fawcett; P Pavlidis; J J A Holden; M E S Lewis; E Rajcan-Separovic
Journal:  Hum Genet       Date:  2010-05-29       Impact factor: 4.132

3.  PGMapper: a web-based tool linking phenotype to genes.

Authors:  Qing Xiong; Yuhui Qiu; Weikuan Gu
Journal:  Bioinformatics       Date:  2008-01-18       Impact factor: 6.937

4.  CANDID: a flexible method for prioritizing candidate genes for complex human traits.

Authors:  Janna E Hutz; Aldi T Kraja; Howard L McLeod; Michael A Province
Journal:  Genet Epidemiol       Date:  2008-12       Impact factor: 2.135

Review 5.  Candidate gene prioritization.

Authors:  Ali Masoudi-Nejad; Alireza Meshkin; Behzad Haji-Eghrari; Gholamreza Bidkhori
Journal:  Mol Genet Genomics       Date:  2012-08-15       Impact factor: 3.291

6.  Systematic biological prioritization after a genome-wide association study: an application to nicotine dependence.

Authors:  Scott F Saccone; Nancy L Saccone; Gary E Swan; Pamela A F Madden; Alison M Goate; John P Rice; Laura J Bierut
Journal:  Bioinformatics       Date:  2008-06-19       Impact factor: 6.937

7.  Walking the interactome for prioritization of candidate disease genes.

Authors:  Sebastian Köhler; Sebastian Bauer; Denise Horn; Peter N Robinson
Journal:  Am J Hum Genet       Date:  2008-03-27       Impact factor: 11.025

8.  Advances in translational bioinformatics: computational approaches for the hunting of disease genes.

Authors:  Maricel G Kann
Journal:  Brief Bioinform       Date:  2009-12-10       Impact factor: 11.622

9.  A multi-dimensional evidence-based candidate gene prioritization approach for complex diseases-schizophrenia as a case.

Authors:  Jingchun Sun; Peilin Jia; Ayman H Fanous; Bradley T Webb; Edwin J C G van den Oord; Xiangning Chen; Jozsef Bukszar; Kenneth S Kendler; Zhongming Zhao
Journal:  Bioinformatics       Date:  2009-07-14       Impact factor: 6.937

10.  Analysis of susceptible genes and chromosome loci for lung cancers by automated gene prediction tools and genome scanning meta-analysis.

Authors:  Yu Tian; Daoxin Wang
Journal:  Int J Clin Exp Pathol       Date:  2015-09-01
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