Literature DB >> 16423342

scylla and charybde, homologues of the human apoptotic gene RTP801, are required for head involution in Drosophila.

Anne Scuderi1, Karl Simin, Sandra G Kazuko, James E Metherall, Anthea Letsou.   

Abstract

We employed robotic methods and the whole-genome sequence of Drosophila melanogaster to facilitate a large-scale expression screen for spatially restricted transcripts in Drosophila embryos. In this screen, we identified a pair of genes, scylla (scyl) and charybde (chrb), that code for dorsal transcripts in early Drosophila embryos and are homologous to the human apoptotic gene RTP801. In Drosophila, both gene products are transcriptionally regulated targets of Dpp/Zen-mediated signal transduction and appear more generally to be downstream targets of homeobox regulation. Gene disruption studies revealed the functional redundancy of scyl and chrb, as well as their requirement for embryonic head involution. From the perspective of functional genomics, our studies demonstrate that global surveys of gene expression can complement traditional genetic screening methods for the identification of genes essential for development: beginning from their spatio-temporal expression profiles and extending to their downstream placement relative to dpp and zen, our studies reveal roles for the scyl and chrb gene products as links between patterning and cell death.

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Year:  2006        PMID: 16423342     DOI: 10.1016/j.ydbio.2005.12.014

Source DB:  PubMed          Journal:  Dev Biol        ISSN: 0012-1606            Impact factor:   3.582


  10 in total

1.  RTP801/REDD1 regulates the timing of cortical neurogenesis and neuron migration.

Authors:  Cristina Malagelada; Miguel Angel López-Toledano; Ryan T Willett; Zong Hao Jin; Michael L Shelanski; Lloyd A Greene
Journal:  J Neurosci       Date:  2011-03-02       Impact factor: 6.167

2.  Enhancer loops appear stable during development and are associated with paused polymerase.

Authors:  Yad Ghavi-Helm; Felix A Klein; Tibor Pakozdi; Lucia Ciglar; Daan Noordermeer; Wolfgang Huber; Eileen E M Furlong
Journal:  Nature       Date:  2014-07-02       Impact factor: 49.962

3.  miR-222-3p is involved in neural tube closure by directly targeting Ddit4 in RA induced NTDs mouse model.

Authors:  Yuqing Sun; Juan Zhang; Yufei Wang; Lei Wang; Meiyan Song; Ajab Khan; Li Zhang; Bo Niu; Hong Zhao; Meining Li; Tiane Luo; Qiwei He; Xianghui Xie; Zhizhen Liu; Jun Xie
Journal:  Cell Cycle       Date:  2021-11-15       Impact factor: 4.534

4.  Transcriptional coupling of distant regulatory genes in living embryos.

Authors:  Michal Levo; João Raimundo; Xin Yang Bing; Zachary Sisco; Philippe J Batut; Sergey Ryabichko; Thomas Gregor; Michael S Levine
Journal:  Nature       Date:  2022-05-04       Impact factor: 69.504

5.  Genome-wide identification of hypoxia-induced enhancer regions.

Authors:  Nick Kamps-Hughes; Jessica L Preston; Melissa A Randel; Eric A Johnson
Journal:  PeerJ       Date:  2015-12-21       Impact factor: 2.984

6.  Tsetse fly tolerance to T. brucei infection: transcriptome analysis of trypanosome-associated changes in the tsetse fly salivary gland.

Authors:  Irina Matetovici; Guy Caljon; Jan Van Den Abbeele
Journal:  BMC Genomics       Date:  2016-11-25       Impact factor: 3.969

7.  High-resolution single-cell 3D-models of chromatin ensembles during Drosophila embryogenesis.

Authors:  Qiu Sun; Alan Perez-Rathke; Daniel M Czajkowsky; Zhifeng Shao; Jie Liang
Journal:  Nat Commun       Date:  2021-01-08       Impact factor: 14.919

8.  The stress-response gene redd1 regulates dorsoventral patterning by antagonizing Wnt/β-catenin activity in zebrafish.

Authors:  Qiang Feng; Xia Zou; Ling Lu; Yun Li; Yunzhang Liu; Jianfeng Zhou; Cunming Duan
Journal:  PLoS One       Date:  2012-12-26       Impact factor: 3.240

9.  Regulation of the BMP Signaling-Responsive Transcriptional Network in the Drosophila Embryo.

Authors:  Lisa Deignan; Marco T Pinheiro; Catherine Sutcliffe; Abbie Saunders; Scott G Wilcockson; Leo A H Zeef; Ian J Donaldson; Hilary L Ashe
Journal:  PLoS Genet       Date:  2016-07-05       Impact factor: 5.917

10.  Genome-Wide Ultrabithorax Binding Analysis Reveals Highly Targeted Genomic Loci at Developmental Regulators and a Potential Connection to Polycomb-Mediated Regulation.

Authors:  Daria Shlyueva; Antonio C A Meireles-Filho; Michaela Pagani; Alexander Stark
Journal:  PLoS One       Date:  2016-08-30       Impact factor: 3.240

  10 in total

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