Literature DB >> 16420615

Wood-inhabiting fungal communities in woody debris of Norway spruce (Picea abies (L.) Karst.), as reflected by sporocarps, mycelial isolations and T-RFLP identification.

Johan Allmér1, Rimvis Vasiliauskas, Katarina Ihrmark, Jan Stenlid, Anders Dahlberg.   

Abstract

Wood-inhabiting fungi play a key role in forest ecosystems and constitute an essential part of forest biodiversity. We therefore examined the composition and abundance of wood-inhabiting fungi by three methods: sporocarp counts, mycelial culturing and direct amplification of internal transcribed spacer terminal restriction fragment length polymorphism from wood combined with sequencing of reference rDNA. Seven-year-old slash piles left after a thinning were analyzed in a 50-year-old Norway spruce plantation. Fifty-eight fungal species were detected from the piled branches and treetops. More species were revealed by sporocarp counts and cultured mycelia than by direct amplification from wood. In principle, sporocarp monitoring may reveal all fruiting taxa, but it poorly reflects their relative abundance in the wood. In contrast, terminal restriction fragment length polymorphism will record the most frequent fungal taxa in the wood, but it may overlook uncommon taxa. Culturing mycelia from wood gives a bias towards species favoured by the cultural medium. The results demonstrate the advantage and the limitations of these methods to be considered in analyses of fungal communities in wood.

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Year:  2006        PMID: 16420615     DOI: 10.1111/j.1574-6941.2005.00010.x

Source DB:  PubMed          Journal:  FEMS Microbiol Ecol        ISSN: 0168-6496            Impact factor:   4.194


  10 in total

Review 1.  Using terminal restriction fragment length polymorphism (T-RFLP) to identify mycorrhizal fungi: a methods review.

Authors:  I A Dickie; R G FitzJohn
Journal:  Mycorrhiza       Date:  2007-04-12       Impact factor: 3.387

2.  Intra-specific and intra-sporocarp ITS variation of ectomycorrhizal fungi as assessed by rDNA sequencing of sporocarps and pooled ectomycorrhizal roots from a Quercus woodland.

Authors:  Matthew E Smith; Greg W Douhan; David M Rizzo
Journal:  Mycorrhiza       Date:  2007-08-21       Impact factor: 3.387

3.  Comparison of the Diversity of Basidiomycetes from Dead Wood of the Manchurian fir (Abies holophylla) as Evaluated by Fruiting Body Collection, Mycelial Isolation, and 454 Sequencing.

Authors:  Yeongseon Jang; Seokyoon Jang; Mihee Min; Joo-Hyun Hong; Hanbyul Lee; Hwanhwi Lee; Young Woon Lim; Jae-Jin Kim
Journal:  Microb Ecol       Date:  2015-05-03       Impact factor: 4.552

4.  Species composition of saproxylic fungal communities on decaying logs in the boreal forest.

Authors:  Hedi Kebli; Pascal Drouin; Suzanne Brais; Gavin Kernaghan
Journal:  Microb Ecol       Date:  2011-01-19       Impact factor: 4.552

5.  Relationship between the decomposition process of coarse woody debris and fungal community structure as detected by high-throughput sequencing in a deciduous broad-leaved forest in Japan.

Authors:  Satoshi Yamashita; Hayato Masuya; Shin Abe; Takashi Masaki; Kimiko Okabe
Journal:  PLoS One       Date:  2015-06-25       Impact factor: 3.240

6.  Fungal community structure of fallen pine and oak wood at different stages of decomposition in the Qinling Mountains, China.

Authors:  Jie Yuan; Xiaofeng Zheng; Fei Cheng; Xian Zhu; Lin Hou; Jingxia Li; Shuoxin Zhang
Journal:  Sci Rep       Date:  2017-10-24       Impact factor: 4.379

7.  Limited initial impacts of biomass harvesting on composition of wood-inhabiting fungi within residual stumps.

Authors:  Cédric Boué; Tonia DeBellis; Lisa A Venier; Timothy T Work; Steven W Kembel
Journal:  PeerJ       Date:  2019-12-13       Impact factor: 2.984

8.  Diversity and Phylogeny of Novel Cord-Forming Fungi from Borneo.

Authors:  Rachel Foster; Hanna Hartikainen; Andie Hall; David Bass
Journal:  Microorganisms       Date:  2022-01-22

9.  Determinants of Deadwood-Inhabiting Fungal Communities in Temperate Forests: Molecular Evidence From a Large Scale Deadwood Decomposition Experiment.

Authors:  Witoon Purahong; Tesfaye Wubet; Guillaume Lentendu; Björn Hoppe; Katalee Jariyavidyanont; Tobias Arnstadt; Kristin Baber; Peter Otto; Harald Kellner; Martin Hofrichter; Jürgen Bauhus; Wolfgang W Weisser; Dirk Krüger; Ernst-Detlef Schulze; Tiemo Kahl; François Buscot
Journal:  Front Microbiol       Date:  2018-09-20       Impact factor: 5.640

10.  Complementary molecular methods reveal comprehensive phylogenetic diversity integrating inconspicuous lineages of early-diverged wood-decaying mushrooms.

Authors:  Takashi Shirouzu; Shunsuke Matsuoka; Hideyuki Doi; Nobuaki Nagata; Masayuki Ushio; Kentaro Hosaka
Journal:  Sci Rep       Date:  2020-02-20       Impact factor: 4.379

  10 in total

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