Literature DB >> 16419997

Global dynamic optimization for parameter estimation in chemical kinetics.

Adam B Singer1, James W Taylor, Paul I Barton, William H Green.   

Abstract

We present the first method guaranteed to find the best possible least-squares (chi2) fit of experimental data by a nonlinear kinetic model. Several important advantages of knowing with certainty the best possible fit rather than a locally optimum fit are discussed and demonstrated using data from the recent literature. This is particularly important when the model and the data appear to be inconsistent. With the new method, one can rigorously demonstrate that a nonlinear kinetic model with several adjustable rate parameters is inconsistent with measured experimental data. The numerical method presented is a valuable tool in evaluating the validity of a complex kinetics model.

Year:  2006        PMID: 16419997     DOI: 10.1021/jp0548873

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  5 in total

1.  Approximate Bayesian computation.

Authors:  Mikael Sunnåker; Alberto Giovanni Busetto; Elina Numminen; Jukka Corander; Matthieu Foll; Christophe Dessimoz
Journal:  PLoS Comput Biol       Date:  2013-01-10       Impact factor: 4.475

2.  Robust and efficient parameter estimation in dynamic models of biological systems.

Authors:  Attila Gábor; Julio R Banga
Journal:  BMC Syst Biol       Date:  2015-10-29

3.  Parameter identifiability analysis and visualization in large-scale kinetic models of biosystems.

Authors:  Attila Gábor; Alejandro F Villaverde; Julio R Banga
Journal:  BMC Syst Biol       Date:  2017-05-05

4.  Input-output behavior of ErbB signaling pathways as revealed by a mass action model trained against dynamic data.

Authors:  William W Chen; Birgit Schoeberl; Paul J Jasper; Mario Niepel; Ulrik B Nielsen; Douglas A Lauffenburger; Peter K Sorger
Journal:  Mol Syst Biol       Date:  2009-01-20       Impact factor: 11.429

5.  Properties of cell death models calibrated and compared using Bayesian approaches.

Authors:  Hoda Eydgahi; William W Chen; Jeremy L Muhlich; Dennis Vitkup; John N Tsitsiklis; Peter K Sorger
Journal:  Mol Syst Biol       Date:  2013       Impact factor: 11.429

  5 in total

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