Literature DB >> 16418230

plprot: a comprehensive proteome database for different plastid types.

Torsten Kleffmann1, Matthias Hirsch-Hoffmann, Wilhelm Gruissem, Sacha Baginsky.   

Abstract

Different plant plastid types contain a distinct protein complement for specialized functions and metabolic activities. plprot was established as a plastid proteome database to provide information about the proteomes of chloroplasts, etioplasts and undifferentiated plastids. The current version of plprot features 2,043 protein entries and consists of two modules. Module one contains a BLAST search option and provides comparative information on the proteomes of different plastid types. The second module contains four searchable databases, three for each individual plastid type and one comprehensive composite database that provides the results of plastid proteome analyses from different laboratories. plprot is accessible at http://www.plprot.ethz.ch.

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Year:  2006        PMID: 16418230     DOI: 10.1093/pcp/pcj005

Source DB:  PubMed          Journal:  Plant Cell Physiol        ISSN: 0032-0781            Impact factor:   4.927


  26 in total

1.  Motif analysis unveils the possible co-regulation of chloroplast genes and nuclear genes encoding chloroplast proteins.

Authors:  Ying Wang; Jun Ding; Henry Daniell; Haiyan Hu; Xiaoman Li
Journal:  Plant Mol Biol       Date:  2012-06-26       Impact factor: 4.076

2.  Web-based Arabidopsis functional and structural genomics resources.

Authors:  Yan Lu; Robert L Last
Journal:  Arabidopsis Book       Date:  2008-10-28

3.  Alternative oxidases (AOX1a and AOX2) can functionally substitute for plastid terminal oxidase in Arabidopsis chloroplasts.

Authors:  Aigen Fu; Huiying Liu; Fei Yu; Sekhar Kambakam; Sheng Luan; Steve Rodermel
Journal:  Plant Cell       Date:  2012-04-24       Impact factor: 11.277

4.  AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins.

Authors:  Myriam Ferro; Sabine Brugière; Daniel Salvi; Daphné Seigneurin-Berny; Magali Court; Lucas Moyet; Claire Ramus; Stéphane Miras; Mourad Mellal; Sophie Le Gall; Sylvie Kieffer-Jaquinod; Christophe Bruley; Jérôme Garin; Jacques Joyard; Christophe Masselon; Norbert Rolland
Journal:  Mol Cell Proteomics       Date:  2010-01-10       Impact factor: 5.911

5.  The GreenCut2 resource, a phylogenomically derived inventory of proteins specific to the plant lineage.

Authors:  Steven J Karpowicz; Simon E Prochnik; Arthur R Grossman; Sabeeha S Merchant
Journal:  J Biol Chem       Date:  2011-04-22       Impact factor: 5.157

6.  Deciphering thylakoid sub-compartments using a mass spectrometry-based approach.

Authors:  Martino Tomizioli; Cosmin Lazar; Sabine Brugière; Thomas Burger; Daniel Salvi; Laurent Gatto; Lucas Moyet; Lisa M Breckels; Anne-Marie Hesse; Kathryn S Lilley; Daphné Seigneurin-Berny; Giovanni Finazzi; Norbert Rolland; Myriam Ferro
Journal:  Mol Cell Proteomics       Date:  2014-05-28       Impact factor: 5.911

7.  Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).

Authors:  Sonja Reiland; Giovanni Finazzi; Anne Endler; Adrian Willig; Katja Baerenfaller; Jonas Grossmann; Bertran Gerrits; Dorothea Rutishauser; Wilhelm Gruissem; Jean-David Rochaix; Sacha Baginsky
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-18       Impact factor: 11.205

8.  Proteome dynamics during plastid differentiation in rice.

Authors:  Torsten Kleffmann; Anne von Zychlinski; Doris Russenberger; Matthias Hirsch-Hoffmann; Peter Gehrig; Wilhelm Gruissem; Sacha Baginsky
Journal:  Plant Physiol       Date:  2006-12-22       Impact factor: 8.340

9.  LITTLE NUCLEI genes affecting nuclear morphology in Arabidopsis thaliana.

Authors:  Travis A Dittmer; Nicola J Stacey; Keiko Sugimoto-Shirasu; Eric J Richards
Journal:  Plant Cell       Date:  2007-09-14       Impact factor: 11.277

10.  Proteomic analysis of chloroplast-to-chromoplast transition in tomato reveals metabolic shifts coupled with disrupted thylakoid biogenesis machinery and elevated energy-production components.

Authors:  Cristina Barsan; Mohamed Zouine; Elie Maza; Wanping Bian; Isabel Egea; Michel Rossignol; David Bouyssie; Carole Pichereaux; Eduardo Purgatto; Mondher Bouzayen; Alain Latché; Jean-Claude Pech
Journal:  Plant Physiol       Date:  2012-08-20       Impact factor: 8.340

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